Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4203 170 8e-37 seq4241 147 9e-30 seq4164 134 5e-26 seq4196 109 2e-18 >seq4203 Length=1196433 Score = 170 bits (188), Expect = 8e-37 Identities = 280/404 (69%), Gaps = 11/404 (3%) Strand=Plus/Minus Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 |||||||||||| | || || || || || ||| | || || ||||| || || || Sbjct 875737 TTATAAAGGTGAGATGAAGACCTTCTTCCCCGAGGAAGTATCCTCCATGGTCCTGACGAA 875678 Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 ||||| |||||||||||| |||| | || | | || |||| || || ||||| Sbjct 875677 GATGAAGGAAACAGCAGAAGCATATTTGGGCAAAACTATAACAAATGCCGTCATCACTGT 875618 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || ||||||||||||||| | || |||||||||| || ||||| || ||||||||| Sbjct 875617 GCCAGCTTATTTCAATGATTCTCAGAGGCAAGCAACGAAGGATGCTGGCGCTATTGCTGG 875558 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 | |||||||| |||| || || || ||||| ||||| || |||| || || || | Sbjct 875557 CCTGAATGTTCTCAGAATAATAAACGAGCCTACGGCAGCCGCGATAGCGTACGGTCTCG- 875499 Query 451456 AAAATCAAAAGAAA----CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 | |||||| ||| ||| |||||| | || | || ||||| || || || | Sbjct 875498 ------ATAAGAAAACTGCAGGAGAGAAAAATGTCTTGATTTTCGATTTGGGCGGTGGTA 875445 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATG 451571 | ||| || | || | ||||||||||| | ||||| || ||| | || | Sbjct 875444 CCTTCGATGTGTCGATCCTGACTATTGAAGATGGTATCTTTGAGGTGAAGTCTACAGCCG 875385 Query 451572 GTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG 451615 | ||||| ||||| || || ||||| |||||||| ||| ||| Sbjct 875384 GCGATACACATCTCGGTGGCGAAGACTTTGATAATCGAATGGTG 875341 >seq4241 Length=1709304 Score = 147 bits (162), Expect = 9e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || ||||| || || ||||| || || ||||| ||||| | || Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| | ||| |||||||| || || || || ||||| |||||||| Sbjct 639309 GGATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCA 639250 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| |||||||| || | || ||||| || ||||| || |||||| | | ||||| || Sbjct 639249 ACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAA 639190 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | |||||||||||||| ||| |||| Sbjct 639189 CATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACT 639151 >seq4164 Length=697328 Score = 134 bits (148), Expect = 5e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || | |||||| ||||||||||| || ||||| || || ||| |||| Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||||||||| |||||||| ||||| || |||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | || |||||||||||||| || |||| || | ||||| ||| Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAAT 358154 Query 391230 AT 391231 || Sbjct 358153 AT 358152 Score = 127 bits (140), Expect = 8e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || | || || || || || || | || |||||| |||| Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | ||| |||||||| || || |||||||||||||||||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | || |||||||| || || || | |||||| | ||||||||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 ||| | ||||| | ||||||||| | ||| Sbjct 357925 ATTCAAAAGGAATCTACACTTCACCTTGTA 357896 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || | || || ||||| || ||||| || ||||| | ||| Sbjct 359195 ATGCAGATTTTCGTGAAGACGTTAACCGGGAAAACCATAACTCTCGAAGTTGAGGCTTCT 359136 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || ||| || || ||||||||||| || || || || || Sbjct 359135 GATACTATCGAGAATGTAAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGACCAG 359076 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || || || |||||||||||| | || ||| | ||||| ||| Sbjct 359075 CAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAAGATGGACGCACCTTGTCAGATTACAAT 359016 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || || || || Sbjct 359015 ATTCAGAAGGAATCCACTCTCCATTTGGT 358987 Score = 98.7 bits (108), Expect = 4e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||| | || || ||||| || ||| | || || || | || Sbjct 358968 AATGCAGATTTTTGTCAAAACCTTAACGGGAAAAACCATCACTTTGGAAGTAGAGGCTTC 358909 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| | | ||| ||||||||||| |||||||| || || || ||||| Sbjct 358908 AGATACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATCCCACCAGATCA 358849 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGAT 391205 ||| | || || ||| | || ||||||||||||||| Sbjct 358848 GCAAAGGTTGATCTTCGCTGGAAAACAACTTGAAGAT 358812 >seq4196 Length=1840941 Score = 109 bits (120), Expect = 2e-18 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || |||||||| || || || || || || | || Sbjct 1068583 ATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCC 1068642 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | | ||| || |||||||||||||| |||||||| || ||||| Sbjct 1068643 GATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGATCAG 1068702 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || ||| | || ||||| || || |||||| | ||| | | ||||| ||| Sbjct 1068703 CAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTACAAT 1068762 Query 391230 ATTGATAAGGATGC-AACAC 391248 || | || | ||| ||||| Sbjct 1068763 ATCCAGAAAGGTGCGAACAC 1068782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975600816971660