Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4203 282 3e-70 seq4080 192 4e-43 seq4114 127 2e-23 seq3947 100 2e-15 seq4297 89.7 4e-12 >seq4203 Length=1196433 Score = 282 bits (312), Expect = 3e-70 Identities = 834/1264 (66%), Gaps = 30/1264 (2%) Strand=Plus/Plus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 ||||||||||||| | ||| || || ||||||||||| || || || || | || || | Sbjct 874602 TACCATTGGCATCGATATCGAAGGTAACTTCAATTTGCGGCACACCCCTAGGCGCTGGAG 874661 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || ||| | | ||| | || || |||| ||||| || || | | || ||| | Sbjct 874662 GTATTCCTGTTAGTTCGAATTTGCCAAGGATATTGTTATCCTTGGTCATTGCTCTTTCTC 874721 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 |||| | | ||||||| ||| | | |||||| || ||||| || ||||| ||||| Sbjct 874722 CCTCATAGACTTGGATAAGCACTCCCGGTTGATTGTCAGAATATGTGGTAAA-CGTCTGG 874780 Query 517455 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | || || || || ||||| || | || | ||||||| | ||| || || Sbjct 874781 GTCTGCTTTGTTGGTATCGTCGTGTTCCTCTTGATCAAGGTGGTCATGACACCGCCAGCG 874840 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | ||| | || | ||||| || || | || | | || ||| | ||| Sbjct 874841 GTCTCAATACCCAATGACAACGGAGTTACGTCCAGCAGAAGCAGATCTTGGA---CTTCC 874897 Query 517574 TCAGTTTGACCAAC---AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 || | || | || | |||||||| || |||| || || ||||| || || |||||| Sbjct 874898 TCGGATTTATCACCGTGTAGAATAGCCGCCTGAACTGCTGCGCCATAAGCGACGGCTTCA 874957 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 517689 || ||||| | || | || | || ||| || ||||| |||| ||||| || || | Sbjct 874958 TCTGGATTGATAGACTTGTTCAATTCTTTGCCGTTGAAGAAATCTTGAAGTAACTTCT-G 875016 Query 517690 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 517749 | ||| || || | | || || || |||| || || || || || | || || Sbjct 875017 GATCTTTGGTATTCTGGTAGAGCCACCGACTAGAACGATGCTGTGAACGTGAGCCTTGTC 875076 Query 517750 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTG 517808 || |||| ||| | | || || ||||||||||| ||| || |||||||| | Sbjct 875077 CATCTTTGCGTCCCTAAGCGCCTTCTCCACGGGTTCAAG-GGTGCTCCTGAACAAGTCGG 875135 Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 517866 || || || || ||| | || || || || ||| | || || ||||| || ||||| Sbjct 875136 CGCAGAGCTCCTCAAATCTGGCCCTGGT--GATCGACGTGTAGAAGTCAATACCCTCGAA 875193 Query 517867 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 517926 ||| || |||| ||||| | | || ||||| ||| || | | || || | || Sbjct 875194 CAACGAGTCAATCTCAATGCTTGCCTGCGTCGATGAACTTAACGTTCTCTTCGCTCTCTC 875253 Query 517927 ACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTTATAT 517984 || || ||||| || | || || | |||||| |||| |||||||| |||| ||| Sbjct 875254 GCAGGCAGTCCTCAGACGTCTCAAAGCCCTTTTGTTGAT--GCTCAAATCTTTTTTGTAT 875311 Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| |||| ||| | | || | ||||||||||| ||||| || || Sbjct 875312 TTCCTCTTGAACTCTTGTACAAAGTGATTCACCATTCGATTATCAAAGTCTTCGCCACCG 875371 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | |||| || | |||| | || | || | |||||||||| || || | Sbjct 875372 AGATGTGTATCGCCGGCTGTAGACTTCACCTCAAAGATACCATCTTCAATAGTCAGGATC 875431 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG- 518163 | ||||| ||| ||||| |||| ||| ||||| | ||||| |||| | || || Sbjct 875432 GACACATCGAAGGTACCACCGCCCAAATCGAAAATCAAGACATT--TTTC--TCTCCTGC 875487 Query 518164 -GTTT--TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220 |||| ||||| ||||| ||||| | || || || || || || || || ||||| | Sbjct 875488 AGTTTTCTTATCGAGACCGTACGCTATCGCGGCTGCCGTAGGCTCGTTTATTATTCTGAG 875547 Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 |||||| || |||||||| || ||||| || || ||||| || || ||||| || || Sbjct 875548 AACATTCAGGCCAGCAATAGCGCCAGCATCCTTCGTTGCTTGCCTCTGAGAATCATTGAA 875607 Query 518281 ATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGT 518340 ||| || || ||||| || ||||||| |||| ||| || | ||| || ||| || Sbjct 875608 ATAAGCTGGCACAGTGATGACGGCATTTGTTATAGTTTTGCCCAAATATGCTTCTGCTGT 875667 Query 518341 TTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG-CTTGGATT 518399 || ||||| || | | | ||| || || | || || |||||| | | ||| | Sbjct 875668 TTCCTTCATCTTCGTCAGGACCATGGAGGATACTTCCTC-GGGGAAGAAGGTCTTCATCT 875726 Query 518400 CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 || || ||| || || | | | ||| || |||| |||| | ||| | || |||| Sbjct 875727 CACCTTTATAAGACACCTTGATTTTTGGCTTGCCACCATCATTGACTACTGTGAACGGCC 875786 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | | ||||| || ||| || || || | || | |||||| || ||||||| Sbjct 875787 AATGCTTCATGTCACTTTGTACCGTTGTATCGTCGAAGCGACGACCAATCAAGCGTTTTG 875846 Query 518520 CATC 518523 |||| Sbjct 875847 CATC 875850 >seq4080 Length=441467 Score = 192 bits (212), Expect = 4e-43 Identities = 685/1067 (64%), Gaps = 8/1067 (1%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || || ||||| |||| | |||||||||||||| || || || | |||||| || ||| Sbjct 301495 GTAGACTTATCCACGGCGGAGACATTAAGAATACCGTTCGCGTCAATATCAAAGGTAACT 301554 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || || ||||| || || | | || || || || || | | |||| | |||| Sbjct 301555 TCGATCTGAGGAACTCCACGAGGTGCTGGCGGAATACCGCTAAGCTCAAATTTGCCCAAC 301614 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 || ||||||||||| | |||||||||||| | | ||| || || ||| Sbjct 301615 AAGTTGTTATCTTTAGTCATAGCGCGTTCACCCTCGTATACTTGAATCAATACGCCAGGC 301674 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 ||||| || | |||||||||||| | | | || || || || ||||| || Sbjct 301675 TGATTGTCGGCATAAGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTGTTCCTC 301734 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 | || | |||||| | |||||| || || || | || | |||||| ||||| ||| Sbjct 301735 TTGATGAGCGCGGTCATGACACCACCAGCAGTCTCGATGCCCAAAGAAAGTGGAGTAACA 301794 Query 517544 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 517603 || | || | | || ||| | | ||| | | || |||||||| ||||| Sbjct 301795 TCGAGCAGAAGCAGATCTTGCACCTCTTCGGACTTGTCGCCGTGCAGAATAGCCGCTTGT 301854 Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 | || |||||||| || ||||| ||||||||||| | | || || || | || || Sbjct 301855 ACGGCCGCACCATACGCCACAGCCTCATCAGGATTGATGGATTTGTTAAGCTCCTTGCCG 301914 Query 517664 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 517723 || || || | | ||||| | | || ||||||||| || | ||| || ||||| || Sbjct 301915 TTAAAGAAGTCTTGTAGAAGCTTTTGTATCTTAGGAATGCGCGTTGAGCCACCAACCAAG 301974 Query 517724 ACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGT 517783 || || ||||| | || | ||||||| |||| ||| || || || || ||| Sbjct 301975 ACGATATCATGGATTTGAGCCTTATCCATCTTTGCATCGCGCAACGACTTCTCGACAGGT 302034 Query 517784 TCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTG 517843 || ||| | | || | || | ||| || || ||||| ||| || || | | | Sbjct 302035 TCGAGAGTACCGCGGAAGAGATCAGCACAGAGCTCCTCGAAACGAGCCCTGGTGATGGAG 302094 Query 517844 ACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 517903 || |||| ||||| ||| | || ||||| | || || | | || || ||||| Sbjct 302095 GTATAGAAATCTATTCCCTCGTATAAGGAATCGATCTCGATGCTGGCCTGCGTGGAAGAT 302154 Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 517963 || || | ||| || || || || || || || | || | || | ||| ||| | Sbjct 302155 GACAGAGTACGCTTGGCGCGCTCGCAGGCCGTGCGCAGACGACGGAGGGC--ACGCTTGT 302212 Query 517964 T--GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 518021 | | ||| || | || ||||| | |||||| || | || | | || | | Sbjct 302213 TCGAAGTCAGGTCCTTCTTGTATTTGCGCTTGAATTCCTGCACGAAGTGGTTGACCATGC 302272 Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 | ||||| || || ||||| ||||| | |||| || | ||| | | || | ||||| Sbjct 302273 GGTTATCGAAGTCCTCACCACCCAAGTGGGTATCACCGGCCGTGGACTTGACCTCGAAAA 302332 Query 518082 GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 ||||| || | | ||| | | ||||||| ||| |||||||| | ||| || || | Sbjct 302333 TACCATCCTCGATGGTCAAGATGGATACATCAAAGGTGCCACCACCAAGATCGAAGATCA 302392 Query 518142 GTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 | || ||| || | ||| || || || ||||| ||||| | || ||||| || Sbjct 302393 GGACGTTCCGCTCGCCG--GTGGCCTTCTTGTCGAGACCGTACGCGATCGCGGCAGCGGT 302450 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || || || || | || ||||| | || | || | || || || || || || Sbjct 302451 GGGCTCGTTGATGATACGTAATACATTCAAGCCCGAGATGGTACCAGCGTCCTTGGTTGC 302510 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | || || ||||| || || || || || || || || |||| Sbjct 302511 CTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCAT 302557 >seq4114 Length=817478 Score = 127 bits (140), Expect = 2e-23 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | |||||| | ||||| |||| ||||| ||||||||||| ||||| | Sbjct 549307 TTTATCTTCCTGTTTATCCATGCCATATGCAAGTGCAGCTGCAGTTGGTTCGTTAATTAC 549366 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | ||||| | || ||||| || ||||| || || ||||||| ||||||||| Sbjct 549367 ACGAAGCACATTCAATCCTGCAATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATC 549426 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 ||||||||||||||| |||||||||||||||| ||||| || | |||||| Sbjct 549427 GTTAAAATATGCAGGTACAGTAATAACGGCATTTTTTACTGGAGTATTTAAATAAGCCGC 549486 Query 518335 TGCCGTTTGTTTCATTTT 518352 || |||| |||||||| Sbjct 549487 AGCTGTTTCCTTCATTTT 549504 Score = 107 bits (118), Expect = 1e-17 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || |||||||| || |||||||||||||| ||||||| ||| |||| || || ||| Sbjct 549329 CCATATGCAAGTGCAGCTGCAGTTGGTTCGTTAATTACACGAAGCACATTCAATCCTGCA 549388 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | | ||| ||| |||||||||| |||| || ||||||||||| ||||||||| Sbjct 549389 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATCGTTAAAATATGCAGGTACAGTA 549448 Query 322364 ATAACTGCTTTATTAATAGGTTTTTGTAAATA 322395 ||||| || || || | || | | |||||| Sbjct 549449 ATAACGGCATTTTTTACTGGAGTATTTAAATA 549480 >seq3947 Length=350172 Score = 100 bits (110), Expect = 2e-15 Identities = 130/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 870791 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 870847 ||||||| | || || |||| |||| ||| || ||||| || |||||||| | ||| Sbjct 76497 AAGAAAAGAGTAATCGTGGATTTTTCTAGTCCTAACATTGCCAAGGAAATGCACGTGGGA 76556 Query 870848 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 870907 |||||||| ||||| |||||||| || ||||| || | |||||| | |||||| Sbjct 76557 CATTTAAGGTCAACAATTATTGGAGACAGTATTTCAAGACTGTTAGAATATTTAGGACAC 76616 Query 870908 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 |||| | | |||||| | ||||| ||||| || ||||| |||||||| || || Sbjct 76617 AATGTACTAAGACTCAATCATATAGGTGACTGGGGTACACAATTTGGTATGTTGATAGC 76675 >seq4297 Length=562629 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 634439 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 634498 |||||||| ||||||||||| | |||||| |||| ||| |||||||| | || || Sbjct 50859 ATTTCTGTGTGGAATAATGGAAAAGGTATTCCAGTAGTAATACATAAAGAGGAAAACATG 50918 Query 634499 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 634558 | ||||| | ||||| ||||| | ||| | || || | ||||| || | | || Sbjct 50919 TATGTACCTACCATGATATTTGGTCATCTTCTGACATCATCAAATTATGACGATGAAGAA 50978 Query 634559 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 634610 |||||| |||||||| |||||||| ||| || ||||| ||| |||| Sbjct 50979 GAAAAAGTGACTGGTGGTAGAAATGGTTATGGTGCCAAGCTCTGTAACATTT 51030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780591899799370