Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4080 354 1e-92 seq4203 280 2e-70 seq4247 87.8 2e-12 seq4295 84.2 3e-11 >seq4080 Length=441467 Score = 354 bits (392), Expect = 1e-92 Identities = 789/1172 (67%), Gaps = 18/1172 (2%) Strand=Plus/Plus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 || || ||||| || || || ||||| | |||||| | | |||||| | || Sbjct 301456 CCTTTGTCATTGGTGATGGTGATCTTGTTCTCTTTACCAGTAGACTTATCCACGGCGGAG 301515 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 ||||| | |||||| || || |||| ||| || | || | || || || || | Sbjct 301516 ACATTAAGAATACCGTTCGCGTCAATATCAAAGGTAACTTCGATCTGAGGAACTCCACGA 301575 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 ||||| | |||||||| | | |||||| | || | || ||||||| | | | | Sbjct 301576 GGTGCTGGCGGAATACCGCTAAGCTCAAATTTGCCCAACAAGTTGTTATCTTTAGTCATA 301635 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 |||||||| || || |||| ||| || |||| ||||| || |||| Sbjct 301636 GCGCGTTCACCCTCGTATACTTGAATCAATACGCCAGGCTGATTGTCGGCATAAGTTGTA 301695 Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 ||| |||| | ||| | || || || || || ||| || | || |||||| | | Sbjct 301696 AAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTGTTCCTCTTGATGAGCGCGGTCATGACA 301755 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGA 6994 ||||| ||| |||| || | ||| || || || || || | || | ||| ||||| Sbjct 301756 CCACCAGCAGTCTCGATGCCCAAAGAAAGTGGAGTAACATCGAGCAGAAGCAGATCTTGC 301815 Query 6995 ACAGATTCGTTCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCGTATGCGAC 7053 || |||| | || || || ||| | || ||||| || | ||| || || || || Sbjct 301816 ACCTCTTCGGACTTGTCGCC-GTGCAGAATAGCCGCTTGTACGGCCGCACCATACGCCAC 301874 Query 7054 CGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACAT 7113 |||||||| || || || | ||| || || || || |||||||| | || || | Sbjct 301875 AGCCTCATCAGGATTGATGGATTTGTTAAGCTCCTTGCCGTTAAAGAAGTCTTGTAGAAG 301934 Query 7114 TTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGA 7173 | ||| || || || || || || || ||||| ||||| ||||| |||| | || | Sbjct 301935 CTTTTGTATCTTAGGAATGCGCGTTGAGCCACCAACCAAGACGATATCATGGATTTGAGC 301994 Query 7174 TTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA 7233 ||||| ||||||| || || | | || ||||||||||| | | ||||| | Sbjct 301995 CTTATCCATCTTTGCATCGCGCAACGACTTCTCGACAGGTTCGAGAGTACCGCGGAAGAG 302054 Query 7234 GTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTC 7293 || ||| || ||||| ||||| || | ||| ||||| ||||||||||| | || || Sbjct 302055 ATCAGCACAGAGCTCCTCGAAACGAGCCCTGGTGATGGAGGTATAGAAATCTATTCCCTC 302114 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC---GTTCGCTTTGC 7350 |||||| ||||| || || ||| | | || ||| |||||| || || ||||| || Sbjct 302115 GTATAAGGAATCGATCTCGATGCTGGCCTG---CGTGGAAGATGACAGAGTACGCTTGGC 302171 Query 7351 GCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTT 7410 |||||| || ||||| || | |||||| ||||||||| ||| | | || ||||| Sbjct 302172 GCGCTCGCAGGCCGTGCGCAGACGACGGAGGGCACGCTTGTTCGAAGTCAGGTCCTTCTT 302231 Query 7411 ATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAATCGAAATCTTC 7467 | ||| || || || || | ||||| || || | | | | |||||| || || Sbjct 302232 GTATTTGCGCTTGAATTCCTGCACGAAGTGGTTGACCATGCGGTT---ATCGAAGTCCTC 302288 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| ||||| || || || | ||||| || || ||||| | || ||| | Sbjct 302289 ACCACCCAAGTGGGTATCACCGGCCGTGGACTTGACCTCGAAAATACCATCCTCGATGGT 302348 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 || | || |||||||| || |||||||| || || || || || |||||| ||| | Sbjct 302349 CAAGATGGATACATCAAAGGTGCCACCACCAAGATCGAAGATCAGGACGTTCCGCTCGCC 302408 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 | ||||| ||||||||||||||||| || || || || || || || || ||||| Sbjct 302409 GGTGGCCTTCTTGTCGAGACCGTACGCGATCGCGGCAGCGGTGGGCTCGTTGATGATACG 302468 Query 7648 -AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 || ||| |||| ||| | || || | || || || || || || || ||||| |||| Sbjct 302469 TAATACA-TTCAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGT 302527 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766 | ||||| || ||||| || | || || | ||||| |||| || || || | || | Sbjct 302528 TGAAGTAAGCGGGGACGGTGATCACAGCATTGGTGACAGTCTTGCCTAGGTATGCCTCTG 302587 Query 7767 CGATATCTTTCAT-TTTGGTAAGAACCATCGA 7797 || | || ||||| ||| ||| |||||||| Sbjct 302588 CGGTCTCCTTCATCTTTACCAAG-ACCATCGA 302618 Score = 113 bits (124), Expect = 6e-20 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| |||||||||||||| |||||| || || ||||||||||| || ||| Sbjct 303316 AAAATGGTGTTGTTGGGGTTCATGGCGACTTGGTTTTTGGCGGCGTCCCCGATGAGCCGT 303375 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | |||| || || || || || || ||||| || || || || ||||| ||| Sbjct 303376 TC---AGTTTCTGTGAAGGCCACATAACTGGGTGTCGTACGGTTGCCCTGATCGTTGGCA 303432 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 ||||| || || | ||| || | ||||| ||||| || || ||||| || | ||| Sbjct 303433 ATAATCTCAACTTTGCCGTGCTGGAAAACGCCAACGCAGGAGTAGGTTGTACCAAGATCG 303492 Query 8138 ATACCGATTGC 8148 ||||||| ||| Sbjct 303493 ATACCGACTGC 303503 Score = 100 bits (110), Expect = 4e-16 Identities = 165/235 (70%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||||||||| ||||| || || || || || || || ||||| | ||| Sbjct 258380 ATCAAAATCTTCACCTCCCAAATGAGTGTCACCGTTAGTAGCGACAACCTCAAACACACC 258439 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| | | ||| ||||| || ||||| || ||||||||||| | || || Sbjct 258440 GTTGTCAATGGTAAGCAAACTGACATCGAAAGTACCGCCGCCCAGGTCAAACACTAGCAC 258499 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||| | ||| || ||||| | |||||| ||||| || || || || || || Sbjct 258500 GTTCTTCTCGCCATCT---TTTTTATCTAAACCGTAAGCGATCGCAGCGGCAGTCGGCTC 258556 Query 7636 ATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||| ||||| | | ||| ||| |||| ||| ||| | |||||||| || || Sbjct 258557 ATTGATAATTCTCATTACA-ACCAGACCAGAAATTGTTCCAGCATCTTTGGTTGC 258610 >seq4203 Length=1196433 Score = 280 bits (310), Expect = 2e-70 Identities = 727/1102 (66%), Gaps = 12/1102 (1%) Strand=Plus/Plus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTG 6764 ||||||| ||||| | |||||| | || | |||||| || |||||| || || | | Sbjct 874602 TACCATTGGCATCGATATCGAAGGTAACTTCAATTTGCGGCACACCCCTAGGCGCTGGAG 874661 Query 6765 GAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCAC 6824 | || || |||| || ||| | ||||| | | |||||||| | | | | | ||| | Sbjct 874662 GTATTCCTGTTAGTTCGAATTTGCCAAGGATATTGTTATCCTTGGTCATTGCTCTTTCTC 874721 Query 6825 CTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT---TGTGCCGTTGAGAAGATTT 6881 | |||||||||| || ||| | |||||||| || | || || | | | | Sbjct 874722 CCTCATAGACTTGGATAAGCACTCCCGGTTGATTGTCAGAATATGTGGT--AAACGTCTG 874779 Query 6882 GTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCA 6941 | ||| ||| | ||| |||||||| || ||| || | | |||||| | ||| || Sbjct 874780 GGTCTG-CTTTGTTGGTATCGTCGTGTTCCTCTTGATCAAGGTGGTCATGACACCGCCAG 874838 Query 6942 TAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATT 7001 || || | || | |||| || || ||||||| || | ||| ||||| || | Sbjct 874839 CGGTCTCAATACCCAATGACAACGGAGTTACGTCCAGCAGAAGCAGATCTTGGACTTCCT 874898 Query 7002 CGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061 || ||||| || || || || || || | || || || ||||| || |||| Sbjct 874899 CGGATTTATCACCGTGTAGAATAGCCGCCTGAACTGCTGCGCCATAAGCGACGGCTTCAT 874958 Query 7062 CGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC-GA--TAACATTTGTT 7118 | || || || | || |||| |||||| ||||| || |||| || |||| | || Sbjct 874959 CTGGATTGATAGACTTGTTCAATTCTTTGCCGTTGAAGAAATCTTGAAGTAACTTCTGG- 875017 Query 7119 GAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTAT 7178 || || || |||| || || |||||||| | |||||| | || | | || | Sbjct 875018 --ATCTTTGGTATTCTGGTAGAGCCACCGACTAGAACGATGCTGTGAACGTGAGCCTTGT 875075 Query 7179 CGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCA 7238 | ||||||| ||| | ||| | || || || ||||| | | | ||||||||| Sbjct 875076 CCATCTTTGCGTCCCTAAGCGCCTTCTCCACGGGTTCAAGGGTGCTCCTGAACAAGTCGG 875135 Query 7239 TACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATA 7298 || || |||||||| | || | ||| || || || ||||| |||| || ||| | | Sbjct 875136 CGCAGAGCTCCTCAAATCTGGCCCTGGTGATCGACGTGTAGAAGTCAATACCCTCGAACA 875195 Query 7299 ACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 |||| ||||| |||||| ||| || | || ||| |||||||| ||| || | ||| | Sbjct 875196 ACGAGTCAATCTCAATGCTTGCCTGCGTCGATGAACTTAACGTTCTCTTCGCTCTCTCGC 875255 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | | ||| | | || | ||| | | |||||| || | ||| | Sbjct 875256 AGGCAGTCCTCAGACGTCTCAAAGCCCTTTTGTTGATGCTCAAATCTTTTTTGTATTTCC 875315 Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 || ||||||| ||||| | | || ||| || ||||| ||||| | | Sbjct 875316 TCTTGAACTCTTGTACAAAGTGATTCACCATTCGATTATCAAAGTCTTCGCCACCGAGAT 875375 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538 ||||||| || || || | || || ||||||||||| ||||||| | | | ||| | Sbjct 875376 GTGTATCGCCGGCTGTAGACTTCACCTCAAAGATACCATCTTCAATAGTCAGGATCGACA 875435 Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCT 7598 |||| || |||||||| |||| || ||||| | || || | || | | | |||| Sbjct 875436 CATCGAAGGTACCACCGCCCAAATCGAAAATCAAGACATTTTTCTCTCCTGCAGTTTTCT 875495 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 |||||||||||||||| || || || ||||| || || || || || | ||| |||| Sbjct 875496 TATCGAGACCGTACGCTATCGCGGCTGCCGTAGGCTCGTTTATTATTCTGAGAACATTCA 875555 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||||||| | ||||| ||||| ||||| | || ||||| || || || || | Sbjct 875556 GGCCAGCAATAGCGCCAGCATCCTTCGTTGCTTGCCTCTGAGAATCATTGAAATAAGCTG 875615 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | || | | || || | ||| | ||| || | || |||| Sbjct 875616 GCACAGTGATGACGGCATTTGTTATAGTTTTGCCCAAATATGCTTCTGCTGTTTCCTTCA 875675 Query 7779 TTTTGGTAAGAACCATCGATGA 7800 | || || || ||||| || || Sbjct 875676 TCTTCGTCAGGACCATGGAGGA 875697 Score = 82.4 bits (90), Expect = 1e-10 Identities = 130/186 (70%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| ||||||||||||| |||||| |||||||| || ||||| || | || | Sbjct 877003 GTGTTGCTGGGGTTCATGGCGACTTGGTTTTTCGCCGCATCGCCGATCAGCCTCTCGGTG 877062 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | || || || ||||| ||| || ||||| || || || || || || || || Sbjct 877063 T---CGGTGAAGGCAACGTAGCTTGGTGTGGTTCGGTTGCCCTGATCATTAGCGATGATC 877119 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCG 8143 || || | | ||| |||| || |||||||||||||| || || | ||||| || Sbjct 877120 TCAACCTTCCCATGTTGGAAGACACCCACGCACGAATACGTGGTGCCCAGGTCAATTCCA 877179 Query 8144 ATTGCT 8149 | |||| Sbjct 877180 ACTGCT 877185 >seq4247 Length=3167485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 11452 CCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATTCA 11511 |||| |||||||||||||| ||||| | ||||||||| || | ||||||| | Sbjct 985310 CCAACTGCATCAATTTCATCAATAAATAATATACACGGTGCATGCTTTCGTGCCATAGAA 985369 Query 11512 AATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCC 11571 || ||||| || ||||| | ||| || || |||||||| || | ||| ||| || Sbjct 985370 AACATATCGCGTACTCTGGAAGGGCCAACACCCACAAACATCTCCAAGAATTCTGAACCT 985429 Query 11572 GAACACTG-AATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTTTT 11630 | | |||| |||||| || || | |||||| ||| |||| ||||| | ||||| Sbjct 985430 G-ATACTGTAATAAAGGGTACATTCGCTTCACCAGCTGTAGCTTTAGCTAACAAAGTTTT 985488 Query 11631 ACCTGTACCTGG 11642 ||| ||||| || Sbjct 985489 ACCGGTACCAGG 985500 >seq4295 Length=1969858 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 22362 ATATACATCGGAAGTTGATGGTATAGGTGTGTTGAAAATTCTAGAAGCGATCCGTTTAGC 22421 |||||| | ||||| |||| |||| ||| ||| |||| ||||| || | Sbjct 1562826 ATATACTGCAGAAGTAGATGCAGTAGGGACAGTGAGAATATTAGATGCGATACGCACATG 1562885 Query 22422 AGGTCTAACAAAAACGTGTAAA-TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAG 22480 || || | | ||| |||||| |||||||| || || || || || || || || |||| Sbjct 1562886 TGG-CTTAGAGAAATCTGTAAAATTTTATCATGCTTCAACGTCTGAACTTTATGGCAAAG 1562944 Query 22481 TAAATGAAACTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 ||| ||| ||| |||| |||||| || || |||||||| ||||| |||||||| Sbjct 1562945 TAATGGAAGTTCCGCAAACTGAAAAAACTCCATTTTACCCACGTTCTCCATATGG 1562999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635095922601800