Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4241 179 8e-40 seq4164 156 9e-33 seq4196 109 1e-18 >seq4241 Length=1709304 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||| | |||||| ||||| || |||||||| |||||||||| ||||||||| Sbjct 639151 AGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTG 639210 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||| || || || ||||| | || ||||| || || |||||||| ||| Sbjct 639211 CCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCT 639270 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| |||||||| |||||||| || ||||| |||||| || ||||||||||| Sbjct 639271 TTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTG 639330 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || |||||||| | || || ||||| | |||||| Sbjct 639331 ATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||| || || ||||| || | ||||||||| |||||||| | |||| Sbjct 640183 TGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCTTCCAACTGC 640242 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || ||||| || ||||| ||||| ||||||||||| |||||||| Sbjct 640243 TTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCCTGAATTTTA 640302 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || || ||||| ||| |||||| ||||| || | || ||||| || Sbjct 640303 GCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTGATTGTTTTTCCAGTA 640362 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 640363 AGAGTTTTCACAAAGATTTGCAT 640385 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||| | |||||| ||||| ||||||||||| |||||||||| ||||||||| Sbjct 639379 AGTCGTAAAACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAAAGAGTTCTG 639438 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGAT 195011 || ||||| || || || || || ||||| Sbjct 639439 CCGTCTTCCAGTTGTTTGCCAGCAAAGAT 639467 >seq4164 Length=697328 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || || ||||||||||| ||||||| | ||| | || || ||| Sbjct 357897 ACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCG 357956 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| || | || || || || |||||||| ||||||||||| ||| Sbjct 357957 AGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGA 358016 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| |||||||| |||||||| ||| ||||| | || | |||||| Sbjct 358017 ATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTT 358076 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| || ||||| | ||||| Sbjct 358077 CCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || |||||||| ||||||||||||| | |||| || ||||| || || || || Sbjct 358136 AGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTCAAGTTGTTTTCC 358195 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || ||||| ||||| ||||| ||||| |||||||||||||| || Sbjct 358196 GGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATTTTCGCTTT 358255 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| || ||||| ||||| || ||| ||||| || || | ||| || || || | || Sbjct 358256 GACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTGAGTGT 358315 Query 195123 TTTTACGAACACTTGCAT 195140 | |||| || | ||||| Sbjct 358316 TCTTACAAAGATCTGCAT 358333 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTCC 194983 ||| | ||| | || |||||||| || || |||||||||||||| | |||| || | | Sbjct 358980 TCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAG-GTGCGTC 359038 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 ||||||| |||||||| || ||||| || | || || |||||||| || |||||||| | Sbjct 359039 CATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCT 359098 Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103 | || || || ||| ||| || ||||| || || || ||| || ||||| || || | Sbjct 359099 TATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTA 359158 Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || || || ||||| | ||||| Sbjct 359159 TGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | || | || |||||||| ||||||||||| |||| || || | Sbjct 358344 AGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGA 358403 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||| || || || || || || | | || || || ||||| || ||||| Sbjct 358404 CCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCC 358463 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||| |||||||| ||||| || ||||| |||||||| Sbjct 358464 TTGTCCTGAATTTTAGCTTTGACATTTTCAATTGTGTCCGA 358504 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| || || || || |||||||| | | ||| || ||||| || || ||||| || Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||||||||| ||||| || ||||| || || ||| || ||||| | || | Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || ||||| || || | |||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 >seq4196 Length=1840941 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || ||||||||||| | ||||| | ||||| || ||||| || || ||||||| Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | |||||||| || || || ||||| || || || |||||||| || ||||| || | Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 ||||||| || || || || || ||||| | || || || || | || || || | Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 195131 ACACTTGCAT 195140 | | |||||| Sbjct 1068592 AGATTTGCAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109415570242715