Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4241 131 1e-25 seq4196 127 1e-24 seq4164 96.9 2e-15 >seq4241 Length=1709304 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 ||||| ||||||| |||| ||| || |||||||| || || ||||| ||| | || Sbjct 639157 AAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCT 639216 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 ||||||||||| || ||||| |||| || || || || | || | ||||| ||||| Sbjct 639217 TCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCC 639276 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||||||| | |||| | || |||||||| || | ||| |||||| Sbjct 639277 TGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTT 639336 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||| ||||| || ||||||||||| Sbjct 639337 TTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| ||||| ||| |||| |||| ||| ||||| ||||| Sbjct 640194 TTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAA 640253 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || |||||||| ||| | || | || || ||||| ||| || ||| || Sbjct 640254 GATCAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCCTGAATTTTAGCTTTTACATT 640313 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| | ||| || || || || | || || |||||||| || ||||| ||||| Sbjct 640314 TTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCAC 640373 Query 34970 AAAGATCTGCAT 34981 |||||| ||||| Sbjct 640374 AAAGATTTGCAT 640385 >seq4196 Length=1840941 Score = 127 bits (140), Expect = 1e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| || || || || || || | ||| |||| ||||||||||| || || || | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||||||||| || | || | |||||||| || |||||| |||||| | Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || |||||| || |||| ||| |||||||| |||||||| |||||||||| Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 34972 AGATCTGCAT 34981 |||| ||||| Sbjct 1068592 AGATTTGCAT 1068583 >seq4164 Length=697328 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || | || || | |||||| || | ||| ||| |||||||| || || || | Sbjct 358967 TTCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTG 359026 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | | ||| |||| || ||||| ||||| || || || | || ||||||||| | | Sbjct 359027 ACAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTG 359086 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || ||||| || ||||| || || || || || | ||| ||||| Sbjct 359087 GGATGCCTTCCTTATCCTGGATCTTTGCCTTTAC--ATTCTCGATAGTATCAGAAGCCTC 359144 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| |||| ||||||||||| || || | |||||||| || |||||||| Sbjct 359145 AACTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324615222187560