Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq4296 95.1 2e-14 >seq4296 Length=1824142 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 104873 TTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAATGAAATTGGTGTTAAAGTA 104932 || ||| | || ||||| | ||||||| | || |||| || | |||||| | | Sbjct 1062709 TTGTGGTTTATCAAAGGATCAACAAATGCCAAACACTTAACAGATAAGGGTGTTCATATC 1062768 Query 104933 TGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTT-TCGAAAAGA 104991 ||| |||| ||| ||||||| ||||| |||||||| || || |||| | || | || Sbjct 1062769 TGGGATGAAAATAGTTCACGAGCTTTTTTGGATTCTTGCGGCTT-CACTGATAGAGAGGA 1062827 Query 104992 AGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAATATATCGA 105051 ||||||||| || || ||||||| ||||||||| | || ||| ||| |||||| || Sbjct 1062828 AGGTGATTTGGGGCCTGTTTATGGCTTTCAATGGCGGCACTTTGGTGCTGAATATAAAGA 1062887 Query 105052 CTGTG-ATACCGACTATACCGGCCAAGGTA 105080 | || | || || || || || ||||||| Sbjct 1062888 -TATGCACACAGATTACACGGGACAAGGTA 1062916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658364971464200