Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4254 107 2e-18 seq3895 104 3e-17 >seq4254 Length=3256360 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || ||||||||||| ||||| || || || || || |||||||| | |||||| Sbjct 698811 TACATCTCCGAATGAATATTCTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCG 698870 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | || | ||| || || |||||| || | |||||||||||||| || ||||| | Sbjct 698871 GCAATTTTTACCTCCTGACTAAATCTCTCAATTAAATTTTCATTAACAATACCATCGGAA 698930 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAA 19406 || || |||||||| || ||||| |||||| Sbjct 698931 GCAGCGAAAAATGCCAAGACATGAGAAATAAA 698962 Score = 102 bits (112), Expect = 9e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 ||||||||| | |||||||| ||||| | || ||||||||||| | ||| |||||| | Sbjct 699175 TACTTCTTCTATGGTCCAAAAGGAAGCTACAGCCTTTTTATACATTTCCCAAATATCAGG 699234 Query 19521 ATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTCCATTT 19579 ||||||||||||||| || ||||| | |||| | |||||| || | ||||||| || Sbjct 699235 ATATTGTATAGGAAAGATTACAAAGCGATTTGGACTTTCTTGGAGTAGTGGTTCCAATT 699293 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| | ||||| ||| || ||||| ||||| | ||| || || ||| || Sbjct 698409 CCAGGCATGATTCCTCGTTTCTTCAACCAAAATATCGCAGCGAAACTACCGCTAAAAAAA 698468 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 |||||||| || |||||||||||||||| | ||| | | | ||| | | || Sbjct 698469 ATACCTTCAACCGCTGCAAAAGCAACTATACGTTCAGGAAATGTGGCACTCTCGTGATTG 698528 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| || | ||||||| |||||| ||| ||||| || | |||||| || | |||| Sbjct 698529 ATCCAGTTTAAGGCCCAATTAGCCTTTTTTCCAACACAAGGAAGTGTCTCGATCGCATTA 698588 Query 19201 AATA 19204 |||| Sbjct 698589 AATA 698592 >seq3895 Length=328041 Score = 104 bits (114), Expect = 3e-17 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 |||| | || ||||| ||| ||| ||| | | ||| ||||| ||||| || |||| Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| || ||||||| || ||||||||||| || | || ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 || ||||| | || || | ||| ||||||| |||||||| || |||||||| || Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGT 48810 | ||||||| | ||| | |||| | ||||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 48811 CGTTATCATTAATAATTGATGAATTTA 48837 | ||||| || || | |||| || Sbjct 4633 CTCGATCATATATTATAGCAGAATCTA 4607 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| ||||| | || |||||||||||||| ||| | | |||| |||||||| || Sbjct 6572 ATGCGGATTGATGATGACAAATTCTCCAGATAATACGCGCCTTATATAGATATTACTCGT 6513 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||||||||| |||||||| || || || || || || || || || || || ||||| | Sbjct 6512 ATATGGTTCGATAGATTCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGG 6453 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 ||| | ||| | ||||||||| || | || |||| ||||| Sbjct 6452 TGCTATTAAGAGCGAATTTCTTACGCCGTGCTTCGCGATCTTCGCCTTCAATTCATTCCA 6393 Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 || ||| | | ||| || |||||||| | ||| ||||||||||| Sbjct 6392 ATTCCATAAAGCTGTCGGCTTGACATTCCACATATCGTATTGAAGAAT 6345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| ||||||| |||||||| | ||| |||| || ||||| ||||||||||| ||||| Sbjct 5236 CCAATATTCCTCTTAAGTTCTAAAAAATCCAAAATGTCAGCGTGCCATGGTTCCAAATAA 5177 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 | || | | | ||||||| ||| || ||||||||||| Sbjct 5176 ACAGCAAATGCTCCTGGTCTTTTGTTTCCTCCTTGATC 5139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/222 (70%), Gaps = 13/222 (6%) Strand=Plus/Minus Query 47833 TTAA-TTTATTAAAATCAAAC---TTGTTATTTA---TAACAAACCTATTAAGTGCTATA 47885 |||| ||||| |||||| || ||| ||| | |||| ||| |||| | || ||| Sbjct 5894 TTAAGTTTATCAAAATCGAAAGTTTTGGTATCTGCATTAACGAACATATTGACAGCGATA 5835 Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 || || | || |||||||| || || | ||| | | |||| | ||||| | ||| Sbjct 5834 GAAGCCAAGTTGCATACAGCGACTTCTTCAGGACTGGAGTATTCGACAATTTCGGTGCAT 5775 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG-TTACATGCG 48002 | || | |||||||| || || | || ||||||||| ||| | | ||||| Sbjct 5774 AAGTTGCTGCATTTGATCGTGCCTAGATGTTGATGATTCGATTT---TCGATTACAATGA 5718 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 || |||||||||||| |||||||||||||||||| || ||| Sbjct 5717 TCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTGCGAT 5676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562076162557800