Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4203 168 5e-36 seq4114 140 3e-27 seq4241 127 2e-23 seq4180 118 9e-21 seq4164 116 3e-20 seq3947 105 5e-17 seq4196 98.7 8e-15 >seq4203 Length=1196433 Score = 168 bits (186), Expect = 5e-36 Identities = 542/829 (65%), Gaps = 28/829 (3%) Strand=Plus/Minus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 ||||||||| ||||| || |||| || ||| | ||||| ||||||||||| Sbjct 875418 GAAGATGGTATCTTTGAGGTGAAGTCTACAGCCGGCGATACACATCTCGGTGGCGAAGAC 875359 Query 551817 TTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTG 551874 ||||||||| || |||| |||| | ||| |||| || || | ||| ||||| | Sbjct 875358 TTTGATAATCGAATGGTGAATCAC--TTTGTACAAGAGTTCAAGAGGAAATACAAAAAAG 875301 Query 551875 ATCTATCTACATCTGCCAAAGCTCTTCGT--CGTCTAAGAACTGCTTGCGAAAGAGCCAA 551932 || | |||| | |||| ||| | ||||| || ||||| ||||| ||||| || Sbjct 875300 ATTTGAG--CATCAACAAAAGGGCTTTGAGACGTCTGAGGACTGCCTGCGAGAGAGCGAA 875243 Query 551933 ACGAGCTCT---TTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGG 551989 || | | |||||| || || | | ||||| | || || || || ||||| Sbjct 875242 GAGAACGTTAAGTTCATCG---ACGCAGGCAAGCATTGAGATTGACTCGTTGTTCGAGGG 875186 Query 551990 AATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTT 552049 ||||| | | ||| | || | ||||||| |||||| || | || | || | || Sbjct 875185 TATTGACTTCTACACGTCGATCACCAGGGCCAGATTTGAGGAGCTCTGCGCCGACTTGTT 875126 Query 552050 TAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAA 552109 || | || ||||||| || || | | | || || ||||||| || || | | Sbjct 875125 CAGGAGCACCCTTGAACCCGTGGAGAAGGCGCTTAGGGACGCAAAGATGGACAAGGCTCA 875066 Query 552110 AGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT 552169 || || || || || || ||||| ||||| ||||| || || || | ||| ||| Sbjct 875065 CGTTCACAGCATCGTTCTAGTCGGTGGCTCTACCAGAATACCAAAGATCCA-GAA--GTT 875009 Query 552170 AAGTTC----TTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTG 552225 | ||| || ||||| || ||| |||| || | | | ||||||||||| || | Sbjct 875008 AC-TTCAAGATTTCTTCAACGGCAAAGAATTGAACAAGTCTATCAATCCAGATGAAGCCG 874950 Query 552226 TTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG--GACAAA-CTGATGAAAAAC 552282 | || ||||| || ||| |||| || |||||||| | || ||| | || | || Sbjct 874949 TCGCTTATGGCGCAGCAGTTCAGGCGGCTATTCTACACGGTGATAAATCCGAGG---AAG 874893 Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 | ||| || | | || | || || ||||| | || | ||| | || || | ||| | Sbjct 874892 TCCAAGATCTGCTTCTGCTGGACGTAACTCCGTTGTCATTGGGTATTGAGACCGCTGGCG 874833 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 || | ||||| | | ||| | || || || || || || || | | | | Sbjct 874832 GTGTCATGACCACCTTGATCAAGAGGAACACGACGATACCAACAAAGCAGACCCAGACGT 874773 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 || | || ||||| || |||||| | | || || ||| | | ||| ||||||||| Sbjct 874772 TTACCACATATTCTGACAATCAACCGGGAGTGCTTATCCAAGTCTATGAGGGAGAAAGAG 874713 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | | || || ||||| ||| ||||| | || | || ||| || ||||| || | Sbjct 874712 CAATGACCAAGGATAACAATATCCTTGGCAAATTCGAACTAACAGGAATACCTCCAGCGC 874653 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 || | || || ||||||||||||||||| |||||||||||||||||||| Sbjct 874652 CTAGGGGTGTGCCGCAAATTGAAGTTACCTTCGATATCGATGCCAATGG 874604 Score = 100 bits (110), Expect = 2e-15 Identities = 240/358 (67%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 ||||| ||||| || ||||| | | || | ||| | || || || || |||||| Sbjct 875850 GATGCAAAACGCTTGATTGGTCGTCGCTTCGACGATACAACGGTACAAAGTGACATGAAG 875791 Query 550241 CATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAA 550300 |||||||| ||| | | || |||| | ||| || || | || | | || || || Sbjct 875790 CATTGGCCGTTCACAGTAGTCAATGATGGTGGCAAGCCAAAAATCAAGGTGTCTTATAAA 875731 Query 550301 GGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAA 550359 || | | | || | || | || || || | || || ||||| | | ||| ||||| Sbjct 875730 GG-TGAGATGAAGACCTTCTTCCCCGAGGAAGTATCCTCCATGGTCCTGACGAAGATGAA 875672 Query 550360 ACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTACCAG 550418 ||||||| || | | |||| ||| | | || |||| || || ||||| |||| Sbjct 875671 GGAAACAGCAGAAGCATAT-TTGGGCAAAACTATAACAAATGCCGTCATCACTGTGCCAG 875613 Query 550419 CATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTA 550478 | ||||| ||||| || || | ||||| || || |||||||| ||||||||| || | Sbjct 875612 CTTATTTCAATGATTCTCAGAGGCAAGCAACGAAGGATGCTGGCGCTATTGCTGGCCTGA 875553 Query 550479 ATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||| | || || || || ||||| || || || | || || || || ||||| Sbjct 875552 ATGTTCTCAGAATAATAAACGAGCCTACGGCAGCCGCGATAGCGTACGGTCTCGATAA 875495 >seq4114 Length=817478 Score = 140 bits (154), Expect = 3e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 550328 CAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA 550387 |||||| | || | || | ||||||||||| ||||||| |||| | | | Sbjct 549528 CAAATTGGAGCTTTTGTACTTATGAAAATGAAGGAAACAGCTGCGGCTTATTTAAATACT 549469 Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 ||| | |||| || || |||||||| ||||||||||| || |||||||| ||||| Sbjct 549468 CCAGTAAAAAATGCCGTTATTACTGTACCTGCATATTTTAACGATTCACAACGACAAGCA 549409 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 || || |||||||| | ||||| ||| | ||||| |||||| | || || ||||| ||| Sbjct 549408 ACAAAGGATGCTGGTCAGATTGCAGGATTGAATGTGCTTCGTGTAATTAACGAACCAACT 549349 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAAACA 550539 || ||||||||||||||||| | |||||||| Sbjct 549348 GCAGCTGCACTTGCATATGGCATGGATAAACA 549317 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 ||||| || | || ||| || |||||||||||||||| || ||||| | ||| || Sbjct 549329 CCATATGCAAGTGCAGCTGCAGTTGGTTCGTTAATTACACGAAGCACATTCAATCCTGCA 549388 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 || | ||||| || ||||| ||||||| ||| |||||||||||||| |||||| Sbjct 549389 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATCGTTAAAATATGCAGGTACAGTA 549448 Query 361826 ATCACTGCTTTTT 361838 || || || |||| Sbjct 549449 ATAACGGCATTTT 549461 >seq4241 Length=1709304 Score = 127 bits (140), Expect = 2e-23 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| ||||| | ||| || || |||||| || ||||| |||| |||||||| Sbjct 640168 AGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTG 640227 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | || ||||| ||||| || || | ||||||||| || ||||| |||||| Sbjct 640228 CCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCTTCT 640287 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGT 563435 || || |||||||| |||||| || ||||| |||| | | || || ||||| Sbjct 640288 TTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAA-GCTTCCACCTCAAGAGT 640346 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| |||||||||||||| || || |||||||| Sbjct 640347 GATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 >seq4180 Length=844145 Score = 118 bits (130), Expect = 9e-21 Identities = 180/255 (71%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 368793 AGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATT 368852 |||||| || |||||||||||||| || |||||||| |||| || || || |||||||| Sbjct 741179 AGTTTTTGACTGCTGGTTTGAATCCGGATCTATGCCATATGCACAGATGCACTATCCATT 741238 Query 368853 TGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAACAGAATC 368912 ||| || || ||||| || || | ||| | || || ||| | | || Sbjct 741239 TGAACACTGGGAAGACTTT---AACGA---ATATTTTCCAGCAGACTTTATTGCCGAGGG 741292 Query 368913 AATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCGA 368972 ||||||||| || ||||||||||| || || || || || ||||||| || | |||| Sbjct 741293 AATTGATCAGACGCGTGGTTGGTTCTACACGCTCTTGGTGATATCCACCGCGTTGTTCGG 741352 Query 368973 TAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAAA 369032 ||| || | || || ||| | | || | || | ||| ||| || ||||| || || Sbjct 741353 CAAAGCGCCATTCAAGAATCTTGTGGTCAACGGCTTGGTTCTTGCGTCCGATGGCCAGAA 741412 Query 369033 GATGTCAAAAAGTAA 369047 |||||||||| |||| Sbjct 741413 GATGTCAAAACGTAA 741427 >seq4164 Length=697328 Score = 116 bits (128), Expect = 3e-20 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || | ||| | || |||||| ||||||||||| | || |||| Sbjct 358115 GAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCG 358174 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||||||||||||||||| ||||| | ||| || ||||| || ||||| ||||| Sbjct 358175 GCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTC 358234 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 || ||||||||||| ||| || |||||||| || | || || ||| |||| Sbjct 358235 CTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGAC-TTCCAGAG 358293 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | ||||||||||| || ||| | || || || |||||| Sbjct 358294 TGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCATA 358334 Score = 114 bits (126), Expect = 1e-19 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || |||||||| ||||| ||| ||| || |||||| ||||| | | ||| | Sbjct 357888 AGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGA 357947 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || ||||||||||| || ||||| | ||| |||||||||||||||||||||||| Sbjct 357948 CCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCT 358007 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || || |||||||| ||| || ||||||||| || | || | | ||| | || Sbjct 358008 TTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCG-ATGCTTCAACTTCCAATGT 358066 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || || || | ||| || ||||| || |||||| Sbjct 358067 GATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCATA 358106 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||||||||||||||| || || || | ||||||||||| || || || ||||| || Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAA 563437 ||||||||||| ||| || ||||||||||| | | ||| ||| | ||| | Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTAC-TTCCAAAGTGA 358930 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || | ||||| || ||||| ||||| Sbjct 358931 TGGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCAT 358967 >seq3947 Length=350172 Score = 105 bits (116), Expect = 5e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 ||||||||| || || |||||||| |||||||| | |||||||| | || || ||| Sbjct 76515 GATTTTTCTAGTCCTAACATTGCCAAGGAAATGCACGTGGGACATTTAAGGTCAACAATT 76574 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAAT 930785 |||||||| | | | ||| | | ||||||| ||| || || | || ||||| Sbjct 76575 ATTGGAGACAGTATTTCAAGACTGTTAGAATATTTAGGACACAATGTACTAAGACTCAAT 76634 Query 930786 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||||| ||||| ||||| ||||||||||||||||| || || Sbjct 76635 CATATAGGTGACTGGGGTACACAATTTGGTATGTTGATAGC 76675 >seq4196 Length=1840941 Score = 98.7 bits (108), Expect = 8e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||||||||| | ||||| | | ||| || || ||||| || || || || |||| | Sbjct 1068764 ATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATGAGTCGT 1068705 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| || |||||||| || ||||||||||| || ||| || ||||| ||| Sbjct 1068704 TGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCAATGGTA 1068645 Query 563413 TCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | ||| ||||| || | |||||||| || || || || || || ||||| Sbjct 1068644 TCGGAGGCCTCTAC-CTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAAAGATTTG 1068586 Query 563472 CAT 563474 ||| Sbjct 1068585 CAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029050351451050