Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4241 168 5e-37 seq4164 165 6e-36 seq4247 102 6e-17 seq4196 96.9 3e-15 >seq4241 Length=1709304 Score = 168 bits (186), Expect = 5e-37 Identities = 182/240 (76%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||||||||| ||||| || ||||| ||||| || |||||||||| | ||||||| | Sbjct 639154 CGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639213 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| || || || ||||| || |||||||||||||| || |||||||| ||||| Sbjct 639214 TCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTG 639273 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || |||||||| ||| || |||||| || || || | || |||||||| |||| Sbjct 639274 TCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATG 639333 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGATTTGTAAAACTA 101494 ||||| || || | || || || || |||||||| | | ||||| | ||||||||| Sbjct 639334 GTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATTCCTCCACGAAG--TCGTAAAACTA 639391 Score = 132 bits (146), Expect = 4e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 |||||||| |||||||| |||||||||||||| |||||||| || ||||||| ||||| Sbjct 640030 AAACGCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCT 640089 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | |||||| || | ||| ||||| ||||||| |||||||| || | ||| || ||||| Sbjct 640090 ATAGTGTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAG 640149 Query 101462 ATCTGCATGGTTACGCGAAGA 101482 |||||||| | | |||||| Sbjct 640150 ATCTGCATTCCTCCTCGAAGA 640170 Score = 98.7 bits (108), Expect = 8e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||||||||||| ||||| || ||||||||||| || |||||||||| Sbjct 639368 TTCCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 639427 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTG 101352 | ||||||| | || |||| ||| || || ||||| || |||||||| || Sbjct 639428 AAAGAGTTCTGCCGTCTTCCAGTTGTTTGCCAGCAAAGATTAAACGCTGCTG 639479 >seq4164 Length=697328 Score = 165 bits (182), Expect = 6e-36 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| | || ||||||||||||||||||||||||| | |||| | | Sbjct 358118 ACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCC 358177 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||| || || || || ||||| | ||||||||| || ||||| ||||| || Sbjct 358178 GTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTT 358237 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| ||| ||| |||| | ||||| || | ||| ||||| ||||||| Sbjct 358238 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGAT 358297 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || || | ||| ||||||| |||||||| Sbjct 358298 CGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | ||| | | ||| ||||| || || ||||| || || ||||||||||| | Sbjct 358967 TTCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTG 359026 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | ||||| || || || ||||||||||| || || || | Sbjct 359027 ACAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTG 359086 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | |||||||| ||||| || || ||| |||||| | || | ||| ||||| | || | Sbjct 359087 GGATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAA 359146 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 |||| ||||| | ||||| |||||||| || || || || ||||||||||| Sbjct 359147 CTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCATGGT 359198 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| || || || || ||||| | || ||||| || || || ||||| || Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| ||| ||| |||| | || || || | || ||||| | ||||| Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||| ||||| ||||| |||||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCAT 358967 >seq4247 Length=3167485 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| || || ||||||||||| | ||||||||||| || || ||||| || | Sbjct 1136619 CCACCTCGCAAGCGCAAAACTAAATGTAACGTAGATTCTTTCTGAATGTTGTAGTCTGAC 1136560 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| ||| |||| ||||||||||| || ||||| || || | |||||||| |||||| Sbjct 1136559 AGAGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAAATTAACCTTTGTTGATCTGGCGGA 1136500 Query 101363 ATGCCT 101368 || ||| Sbjct 1136499 ATTCCT 1136494 >seq4196 Length=1840941 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 101280 CTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATA 101339 |||| || ||||||||||| | || ||| | |||| |||| || || || || || | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 101340 TCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTT 101399 | | || || ||||| || ||||| || || ||||||||||| || ||| ||| ||| Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 101400 CTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAA 101459 | | || || || | || || || || |||| ||||| || || | || || |||| Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 101460 ATATCTGCATGGT 101472 | || |||||||| Sbjct 1068592 AGATTTGCATGGT 1068580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396255966308265