Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4241 109 4e-19 seq4164 102 6e-17 seq4196 93.3 3e-14 >seq4241 Length=1709304 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || ||||| || || ||||| || || ||||| ||||| ||| ||| Sbjct 640168 AGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTG 640227 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| ||||| || || ||||| | ||||| || || Sbjct 640228 CCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCTTCT 640287 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||||| | | | || || || |||||||| | || Sbjct 640288 TTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTG 640347 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | |||||| ||||| || ||||| Sbjct 640348 ATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || || || || ||| || |||||||| |||||||| || ||| ||| Sbjct 639151 AGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTG 639210 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||| || || ||||| || | ||||||||||| | |||| |||||| Sbjct 639211 CCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCT 639270 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| || | | | || || ||||| || || | || Sbjct 639271 TTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTG 639330 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | || || || || |||||||| Sbjct 639331 ATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 >seq4164 Length=697328 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || |||||||| ||||||||||| |||| |||| |||| || Sbjct 358125 ACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTCA 358184 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || |||| || ||||||||| | |||| || |||||||| | Sbjct 358185 AGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTGA 358244 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | ||||| || || || |||| || |||||||| Sbjct 358245 ATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTA 358304 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||||| |||||||| Sbjct 358305 CCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| || || |||||||||||||| || | | || | || || Sbjct 358987 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTCA 359046 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || |||| ||||| || || | || | ||| ||||| || Sbjct 359047 AGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 359106 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| |||||| | | || || || ||||| || || | || || ||||| Sbjct 359107 ATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTC 359166 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || || ||||||||||| ||| Sbjct 359167 CCGGTTAACGTCTTCACGAAAATCTGCATGGTG 359199 >seq4196 Length=1840941 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| || ||||||||||| || ||| | || | || |||| ||| || || || || | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | ||||| || ||||||| |||| |||||||| || |||||| ||| ||| Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || ||||| ||||| | || || ||||| ||||| | || || |||| Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 48757 AAATCTGCATCGTG 48770 | || ||||| ||| Sbjct 1068592 AGATTTGCATGGTG 1068579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380916034765335