Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq4241 100 2e-16 seq4164 84.2 2e-11 >seq4241 Length=1709304 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || || ||| | || || |||||||| ||| ||| || |||| Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | |||| || |||| || ||||||||||| | || |||| Sbjct 639309 GGATACCATAGAAAACGTCAAAGCCAAAATTCAG-GACAAAGAGGGCATTCCACCTGATC 639251 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| | | |||||||| |||||||| ||||||| | |||| | ||||||| | Sbjct 639250 AACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACA 639191 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||| ||||| || || ||| | || ||| || | || ||||| Sbjct 639190 ACATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28683 ATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAA 28742 |||||||| ||||||||| ||||||| | |||| | ||||||| |||||||||||| Sbjct 639467 ATCTTTGCTGGCAAACAACTGGAAGACGGCAGAACTCTTTCCGATTACAACATTCAAAAA 639408 Query 28743 GAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || ||| | || ||| || | || ||||| || Sbjct 639407 GAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGGAAT 639367 >seq4164 Length=697328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||| |||| | || |||||||| || || ||| ||| | ||| Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || |||| || ||||| || || | || |||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAA-GACAAGGAAGGTATTCCACCAGATCA 358215 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||| | || || || || |||||| | ||||| ||| | ||||||| || Sbjct 358214 ACAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAA 358155 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||||||||| ||| |||| |||| Sbjct 358154 TATACAAAAAGAATCAACTTTGCATTTGGT 358125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425380717435455