Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4203 190 1e-42 seq4241 123 2e-22 seq4114 122 6e-22 seq4164 118 7e-21 seq4080 111 1e-18 seq3947 107 1e-17 seq4196 104 2e-16 seq4180 100 2e-15 seq3857 98.7 6e-15 seq4297 91.5 1e-12 >seq4203 Length=1196433 Score = 190 bits (210), Expect = 1e-42 Identities = 529/799 (66%), Gaps = 18/799 (2%) Strand=Plus/Minus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 ||||| || ||| ||||||| ||||| ||||| ||||||||| || | || |||| | Sbjct 875391 ACAGCCGGCGATACACATCTCGGTGGCGAAGACTTTGATAATCGAATGGTGAATCAC--T 875334 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAA--GCATT 475482 ||| |||| |||||||||||| | ||| || ||| | |||| | ||| || || Sbjct 875333 TTGTACAAGAGTTCAAGAGGAAATACAAAAAAGA--TTTGAGCATCAACAAAAGGGCTTT 875276 Query 475483 AAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAAC 475542 |||||||| || ||||| || || | || ||| || | | ||| | || || | Sbjct 875275 GAGACGTCTGAGGACTGCCTGCGAGAGAGCGAAGAGAACGTTAAGTTCATCGACGCAGGC 875216 Query 475543 TACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGC 475602 | |||| |||| || | || || || ||||| | | || || || ||||| Sbjct 875215 AAGCATTGAGATTGACTCGTTGTTCGAGGGTATTGACTTCTACACGTCGATCACCAGGGC 875156 Query 475603 TAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT 475662 | |||||| || | || | || | || || | || |||||||||| || | | Sbjct 875155 CAGATTTGAGGAGCTCTGCGCCGACTTGTTCAGGAGCACCCTTGAACCCGTGGAGAAGGC 875096 Query 475663 TCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 || || || | || | ||||| | || || || || ||||| || || || || Sbjct 875095 GCTTAGGGACGCAAAGATGGACAAGGCTCACGTTCACAGCATCGTTCTAGTCGGTGGCTC 875036 Query 475723 AACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAA 475781 || ||||| ||||| || |||| | |||| || | || || || ||| | || | Sbjct 875035 TACCAGAATACCAAAGAT-CCAGAAGTTACTTCAAGATTTCTTCAACGGCAAAGAATTGA 874977 Query 475782 ATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT 475839 | |||| || ||||| |||||||| || || ||||| || || || || || ||||| Sbjct 874976 A--CAAGTCTATCAATCCAGATGAAGCCGTCGCTTATGGCGCAGCAGTTCAGGCGGCTAT 874919 Query 475840 TTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACT 475899 | || ||| | | |||| || | | || | | || | ||||||||||| | Sbjct 874918 TCTACACGGTGATAAATCCGAGGAAGTCCAAGATCTGCTTCTGCTGGACGTAACTCCGTT 874859 Query 475900 TTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCC 475959 ||||| ||| |||| || | ||| || | ||||| | | || | || || || | Sbjct 874858 GTCATTGGGTATTGAGACCGCTGGCGGTGTCATGACCACCTTGATCAAGAGGAACACGAC 874799 Query 475960 TATCCCATGCAAA--AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTA 476017 || ||| |||| | | | | | ||| |||| |||||||| |||||| | || Sbjct 874798 GATACCA-ACAAAGCAGACCCAGA-CGTTTACCACATATTCTGACAATCAACCGGGAGTG 874741 Query 476018 ACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACT 476077 |||||| ||| ||| || |||||| | | || || ||||| || | ||||| | Sbjct 874740 CTTATCCAAGTCTATGAGGGAGAAAGAGCAATGACCAAGGATAACAATATCCTTGGCAAA 874681 Query 476078 TTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 || | || ||| || ||||| || || || || || || |||||||||||||| || Sbjct 874680 TTCGAACTAACAGGAATACCTCCAGCGCCTAGGGGTGTGCCGCAAATTGAAGTTACCTTC 874621 Query 476138 GATATTGATGCAAATGGTA 476156 ||||| ||||| ||||||| Sbjct 874620 GATATCGATGCCAATGGTA 874602 Score = 136 bits (150), Expect = 3e-26 Identities = 278/406 (68%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | |||||||||||| || || ||||| || || ||| ||| ||| Sbjct 875850 GATGCAAAACGCTTGATTGGTCGTCGCTTCGACGATACAACGGTACAAAGTGACATGAAG 875791 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAATACACG 474635 |||||||| || | || | |||| |||||| || ||| | || || | || | Sbjct 875790 CATTGGCCGTTCACAGTAGTCAATGATGGTGGCAAGCCAAAAATCAAGGTGTCTTATAA- 875732 Query 474636 CAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATG 474694 |||||| | || || | ||| ||| | || | || || ||||| | | || ||| Sbjct 875731 -AGGTGAGATGAAGACCTTCTTCCCCG-AGGAAGTATCCTCCATGGTCCTGACGAAGATG 875674 Query 474695 AAACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCC 474753 || |||| || ||||| |||| ||| | |||| |||| || || ||||| || Sbjct 875673 AAGGAAACAGCAGAAGCATAT-TTGGGCAAAACTATAACAAATGCCGTCATCACTGTGCC 875615 Query 474754 AGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCT 474813 ||| ||||| ||||||||||| | |||||||| || ||||| || ||||| || || Sbjct 875614 AGCTTATTTCAATGATTCTCAGAGGCAAGCAACGAAGGATGCTGGCGCTATTGCTGGCCT 875555 Query 474814 TAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 |||||| | | || || || || || || |||||||| | || || ||||| ||||| Sbjct 875554 GAATGTTCTCAGAATAATAAACGAGCCTACGGCAGCCGCGATAGCGTACGGTCTCGATAA 875495 Query 474874 GAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 ||| ||| ||| |||||| || || || |||| || ||| Sbjct 875494 GAAAACTGCAGGAGAGAAAAATGTCTTGATTTTCGATTTGGGCGGT 875449 >seq4241 Length=1709304 Score = 123 bits (136), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| ||||| | ||| ||||| |||||| | || || |||| |||||| Sbjct 640165 CGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTT 640224 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| |||||| | |||||||||||||| || |||||||| ||||| || ||||| ||| Sbjct 640225 CTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCT 640284 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| ||||| || ||| ||| ||| || || |||| | ||||| Sbjct 640285 TCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAGA 640344 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || ||||| || || || ||||| Sbjct 640345 GTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTG 640382 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || | || | |||||||| ||| || || || ||||| | ||||| Sbjct 639147 ACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGT 639206 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||||| || || || |||||||| || | ||| ||||||||||| ||||| || Sbjct 639207 TCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCC 639266 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 || ||||| ||||| || |||||| ||| || ||||| | | | || ||||| Sbjct 639267 CTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAA-CTTCAA 639325 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || ||||| || ||||| ||||| ||||| || || Sbjct 639326 GGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTG 639365 >seq4114 Length=817478 Score = 122 bits (134), Expect = 6e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||||| |||| || |||||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 549466 AGTAAAAAATGCCGTTATTACTGTACCTGCATATTTTAACGATTCACAACGACAAGCAAC 549407 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 || ||||| || |||||||| | ||||| | ||| | ||||| |||||||| || Sbjct 549406 AAAGGATGCTGGTCAGATTGCAGGATTGAATGTGCTTCGTGTAATTAACGAACCAACTGC 549347 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAA 474873 ||| |||||||| ||||| | ||||| Sbjct 549346 AGCTGCACTTGCATATGGCATGGATAA 549320 Score = 89.7 bits (98), Expect = 3e-12 Identities = 192/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 475904 TTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACA-GAAATACTCCTAT 475962 |||||| |||||||| |||| || | | || || ||| | || | || || |||| Sbjct 547977 TTAGGTATTGAAACACTTGGTGGTGTGTTTACGAAA-TTAATCACTCGTAACACAACTAT 547919 Query 475963 CCC-ATGCAAAAAA-TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 || | | |||| | ||| ||||||||||| ||||| ||||||| || Sbjct 547918 ACCTACGAAAAAGAGTCAG--GTATTTTCCACAGCAGCTGATGGTCAAACACAAGTCGAG 547861 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 || || | | |||| ||| || || | ||| ||||| || ||| ||| ||| Sbjct 547860 ATTAAAGTTCATCAAGGCGAACGAGAAATGGCTAGTGATAACAAGTTACTGGGACAATTT 547801 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | |||| |||||||||||||| || || || || || ||||| ||||| || |||||| Sbjct 547800 AGTCTTATTGGTATTCCTCCTGCACCAAGGGGTGTACCACAAATAGAAGTAACGTTTGAT 547741 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 || ||||| |||||||| | | ||| | ||| | ||||| Sbjct 547740 ATCGATGCGAATGGTATAGTACACGTTTCCGCTAGAGATAA 547700 >seq4164 Length=697328 Score = 118 bits (130), Expect = 7e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| || |||||||| ||||||||| ||| || || ||||||||| | | ||| Sbjct 357885 CGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTG 357944 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | || || ||||| |||||||| ||||| | | || |||||||||||||||||| Sbjct 357945 CGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCT 358004 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 || ||||| ||||| || ||||||| ||||| || || | || | || || ||| Sbjct 358005 TCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAACTTCCAA- 358063 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || | |||||| ||||| || || Sbjct 358064 TGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTG 358102 Score = 102 bits (112), Expect = 5e-16 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | ||| | || |||||| | ||| ||||| | || || Sbjct 358112 ACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGT 358171 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||||||||| ||||| || ||||| | | |||||||| || ||||| || Sbjct 358172 TCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACC 358231 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||| || ||||||| |||||| || || | || | | ||| | Sbjct 358232 TTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGA-CTTCCA 358290 Query 480730 GGGTAATAGTTTTACCGGTGAGAG-TCTTA 480758 | || || |||||||| ||||| | ||||| Sbjct 358291 GAGTGATCGTTTTACCAGTGAGTGTTCTTA 358320 Score = 95.1 bits (104), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||||||||| ||||||||||| ||||| | ||| || || || || || || |||||||| Sbjct 359040 ATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTT 359099 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 || || |||||| || ||| || |||||||||| | | || ||| || || | Sbjct 359100 ATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAA-CTTCGAGAGTTA 359158 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| | ||||| |||||||| || Sbjct 359159 TGGTTTTCCCGGTTAACGTCTTCACGAAAATCTG 359192 Score = 87.8 bits (96), Expect = 1e-11 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||||||||| |||||||| || || | | ||| ||||| || || || |||||||| Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||| || ||||||| |||||| ||||| Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATC 358907 >seq4080 Length=441467 Score = 111 bits (122), Expect = 1e-18 Identities = 442/687 (64%), Gaps = 14/687 (2%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | || || || || || || ||||| |||| || ||| | || || | | Sbjct 302195 CGTCTGCGCACGGCCTGCGAGCGCGCCAAGCGTACTCTGTCATCTTCCACGCAGGCCAGC 302136 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 | || | ||||| | | || ||||| |||| |||| || || |||||| Sbjct 302135 ATCGAGATCGATTCCTTATACGAGGGAATAGATTTCTATACCTCCATCACCAGGGCTCGT 302076 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || || || | ||| |||||||||| | || | ||||| || || |||| | Sbjct 302075 TTCGAGGAGCTCTGTGCTGATCTCTTCCGCGGTACTCTCGAACCTGTCGAG-AAGTCGTT 302017 Query 475667 A-GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | ||| | || | || || | ||| ||||||| || || | || || || ||||| Sbjct 302016 GCGCGATGCAAAGATGGATAAGGCTCAAATCCATGATATCGTCTTGGTTGGTGGCTCAAC 301957 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTT---TAATGGTAAAAAGTTAAA 475782 | ||||| || ||| ||| |||| | | | || ||| || || || | || Sbjct 301956 GCGCATTCCTAAGATAC---AAAAGCTTCTACAAGACTTCTTTAACGGCAAGGAGCTTAA 301900 Query 475783 TGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTT 475842 || | ||||||||||| ||||| || ||||| || || || ||||| |||||| | Sbjct 301899 CAAATCCATCAATCCTGATGAGGCTGTGGCGTATGGTGCGGCCGTACAAGCGGCTATTCT 301840 Query 475843 ATCAGGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 || | | | || | || | | | || | | || | || || |||||||||| Sbjct 301839 G-CACGGCGACAAGTCCGAAGAGGTGCAAGATCTGCTTCTGCTCGATGTTACTCCACTTT 301781 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | || || | || || | ||| || | ||||| || || | || || || | | Sbjct 301780 CTTTGGGCATCGAGACTGCTGGTGGTGTCATGACCGCGCTCATCAAGAGGAACACCACCA 301721 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||||| | || | |||||| | || ||||| | ||| Sbjct 301720 TCCCGACGAAGCAGACTCAAACCT--TTACAACTTATGCCGACAATCAGCCTGGCGTATT 301663 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || ||| | | || |||||| | | ||||||||||| ||| | || | || Sbjct 301662 GATTCAAGTATACGAGGGTGAACGCGCTATGACTAAAGATAACAACTTGTTGGGCAAATT 301603 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | ||| |||||||| || || || | ||||||||||| || |||||||| ||||| Sbjct 301602 TGAGCTTAGCGGTATTCCGCCAGCACCTCGTGGAGTTCCTCAGATCGAAGTTACCTTTGA 301543 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 |||||| || || |||||||||||||| Sbjct 301542 TATTGACGCGAACGGTATTCTTAATGT 301516 >seq3947 Length=350172 Score = 107 bits (118), Expect = 1e-17 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| ||| || ||||| ||||||||||| | ||||| || || || ||||| Sbjct 76515 GATTTTTCTAGTCCTAACATTGCCAAGGAAATGCACGTGGGACATTTAAGGTCAACAATT 76574 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 ||||| || | ||| ||| | | |||| || ||| | |||| |||| | ||| Sbjct 76575 ATTGGAGACAGTATTTCAAGACTGTTAGAATATTTAGGACACAATGTACTAAGACTCAAT 76634 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 ||||| ||||| ||||| ||||||||||||||||| || ||| Sbjct 76635 CATATAGGTGACTGGGGTACACAATTTGGTATGTTGATAGCA 76676 >seq4196 Length=1840941 Score = 104 bits (114), Expect = 2e-16 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| ||||| | ||||| | ||| || || || || ||||| || || || ||||| Sbjct 1068762 ATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATGAGTCGTTG 1068703 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| || |||||||| ||||| ||||||||||| ||||||| |||||| ||||| Sbjct 1068702 CTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCAATGGTATC 1068643 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | || ||||| || |||||||| ||||| ||||| || || ||||| Sbjct 1068642 GGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAAAGATTTG 1068586 >seq4180 Length=844145 Score = 100 bits (110), Expect = 2e-15 Identities = 248/371 (67%), Gaps = 13/371 (4%) Strand=Plus/Plus Query 297303 GTTATCTCGTGTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGG 297362 |||| |||||| | | ||||| || || ||||||||||| || |||||||| |||| Sbjct 741161 GTTACGTCGTGTACCTGAAGTTTTTGACTGCTGGTTTGAATCCGGATCTATGCCATATGC 741220 Query 297363 TCAAATTCATTATCCTTTTGAAAATTCCGAA-ATTTTAGACACTTCACAAGATTATATTG 297421 || || || ||||| |||||| | | ||| | |||| || || ||| | | Sbjct 741221 ACAGATGCACTATCCATTTGAACACTGGGAAGACTTTA-AC------GAATATTTTCCAG 741273 Query 297422 CAGATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTC 297481 |||| ||||| | || ||||||||| || | |||||||| || || | || || Sbjct 741274 CAGACTTTATTGCCGAGGGAATTGATCAGACGCGTGGTTGGTTCTACACGCTCTTGGTGA 741333 Query 297482 TTTCTACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTA 297541 | || || || | || |||| | |||| || ||| | | || | || | ||| Sbjct 741334 TATCCACCGCGTTGTTCGGCAAAGCGCCATTCAAGAATCTTGTGGTCAACGGCTTGGTTC 741393 Query 297542 ACGCAGCTGATGGACAAAAAATGTCAAAAAGTAAAGGTAATTAT-CCTGATCCAAATATT 297600 || | ||||| || || ||||||||| ||||| | | || |||||||| | | Sbjct 741394 TTGCGTCCGATGGCCAGAAGATGTCAAAACGTAAAAAAATTAATACCTGATCCCATGAAA 741453 Query 297601 TTGATGGATAAATATGGTGCAGATACTTTACGTCTTTATTTATTATCAA--CACCTGTAG 297658 || | || |||| || || ||| |||| || || |||||| ||||| | || || | Sbjct 741454 GTGGTCGACCAATACGGAGCGGATGCTTTGCGCCTCTATTTA--ATCAATTCGCCAGTTG 741511 Query 297659 TTAAAGCCGAA 297669 | | ||||||| Sbjct 741512 TGAGAGCCGAA 741522 >seq3857 Length=282743 Score = 98.7 bits (108), Expect = 6e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 || || ||||| ||||| ||||||| |||||| || ||| |||||||||||||| || Sbjct 99906 GACGAGGAGATAAAAAAGGCTTATAGAAAATTGGCCTTGAGATATCATCCTGACAAGAAC 99847 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233 | ||||||| || || ||||| || || ||||| | | || ||| | | || Sbjct 99846 AGGAGTCCTGGTGCTGAGGAAAAATTCAAGGAAATAGCTGAGGCATATGAGGTGTTATCT 99787 Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277 ||| ||| || | ||||| |||||||||||||| || ||||| Sbjct 99786 GATGCAAAAAAGAGGGAAGTCTATGATAAATTTGGTGAGGAAGG 99743 >seq4297 Length=562629 Score = 91.5 bits (100), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 355402 GTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTACCAAATTGA 355461 ||||| || |||| | ||| ||| |||||| |||||| | |||||||||||||||| Sbjct 53411 GTGAAAATGTATCTCGGACTGGCAGAATCTTTTCCTCCAGCGAGTCTTGTACCAAATTGA 53352 Query 355462 CCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCCATTTTTATT 355521 || |||| | | | ||| |||||||| || || ||| |||| || || | || ||| Sbjct 53351 CCGATGGGCTGCAGCAGATTAATGTTGTTGCTACCTACAAAATTCTGCGCGAGATTAATT 53292 Query 355522 ATAGTTTCAGTCATTGACTGTTCTCCATGATGATA 355556 || || | ||| ||| ||| ||||||||||| Sbjct 53291 ATGGTCGCCATCAGGGACGTTTCACCATGATGATA 53257 Score = 89.7 bits (98), Expect = 3e-12 Identities = 115/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 357405 ACCAAAACCATTTTTACCACC---CACTGTTTTCTTTTCGTTTTTATCATAATTAGTTGA 357461 |||| |||||||| ||||||| |||| ||||||| | | | |||||||| | ||| Sbjct 51011 ACCATAACCATTTCTACCACCAGTCACT-TTTTCTTCT--TCATCGTCATAATTTGATGA 50955 Query 357462 TGTCAAAAGTTCTCCAAAAATCATAGATGGTACTAAAATTTTATGCTCTTTATGTTCAAC 357521 ||||| ||| | ||||| ||||| | ||||| | || || | |||||||||| || Sbjct 50954 TGTCAGAAGATGACCAAATATCATGGTAGGTACATACATGTTTTCCTCTTTATGTATTAC 50895 Query 357522 CACATCAATACCATCACCATTATTCCAGACAGTAAT 357557 || |||||| | ||||||||||| |||| ||| Sbjct 50894 TACTGGAATACCTTTTCCATTATTCCACACAGAAAT 50859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267979953412460