Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3895 82.4 4e-11 >seq3895 Length=328041 Score = 82.4 bits (90), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 |||| | || || ||||| ||||| ||||| || | |||||||||||| ||||| | ||| Sbjct 5231 ATTCCTCTTAAGTTCTAAAAAATCCAAAATGTCAGCGTGCCATGGTTCCAAATAAACAGC 5172 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT-GAAAA 26117 ||| ||| |||||| ||| |||||||| ||||| | || ||||||| | || Sbjct 5171 AAATGCTCCTGGTCTTTTGTTTCCTCCTTGATCGACGTAAATAGCTATTTCATTATATAA 5112 Query 26118 CTTTCAA 26124 |||| || Sbjct 5111 CTTTAAA 5105 Score = 82.4 bits (90), Expect = 4e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25003 ATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGG 25062 ||| ||||| | |||||||||||| || || | ||||| | | || || |||| Sbjct 6566 ATTGATGATGACAAATTCTCCAGATAATACGCGCCTTATATAGATATTACTCGTATATGG 6507 Query 25063 TTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTAT 25122 ||| | | |||| || || ||||| || || | || || || ||||||||| |||||| Sbjct 6506 TTCGATAGATTCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATTGGTGCTAT 6447 Query 25123 TAATAGCGAATTTCT 25137 ||| ||||||||||| Sbjct 6446 TAAGAGCGAATTTCT 6432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253025675168375