Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4164 163 5e-35 seq4241 116 7e-21 >seq4164 Length=697328 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| |||||| || | ||||| ||||| || ||| Sbjct 358104 ATACCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCG 358163 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||||||||| || || | |||||||||||| ||||| |||||||||||||| || Sbjct 358164 GATAACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGT 358223 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | |||| ||| || || || | || Sbjct 358224 GGAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCG 358283 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || |||||||| || || ||| ||||||| || ||||| Sbjct 358284 ACTTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||||| || || | ||||| || || ||||||||| ||||| || || | | Sbjct 357891 CGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCG 357950 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||| || ||||| |||||||| ||||||||||| ||||||||||| Sbjct 357951 TCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTG 358010 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | ||| | ||| ||| || || || | |||||||| | || || Sbjct 358011 TCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATG 358070 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||||| || || || || || ||||| Sbjct 358071 GTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| |||||| || | |||||| |||||| |||||||| | || | | || || Sbjct 358353 ACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGACCGTCCTCG 358412 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||||||||||||||||||||| ||||| ||||| ||||| |||||||| || || || Sbjct 358413 AGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGA 358472 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | |||| ||| || || || | |||| |||||| || || || || Sbjct 358473 ATTTTAGCTTTGACATTTTCAATTGTGTCCGACGCCTCAGCTTCTAATGTGATGGTCTT 358531 >seq4241 Length=1709304 Score = 116 bits (128), Expect = 7e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || || ||||| | ||||| || || | ||||| || ||||| ||||| | Sbjct 639186 AATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACG 639245 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || ||||| || || ||||||| ||| | ||| || || Sbjct 639246 CTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGT 639305 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| ||||||||| || || || ||||| ||||| || || || || || || || Sbjct 639306 ATCCGAAGCCTCAACTTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTG 639365 Query 193358 CATT 193361 |||| Sbjct 639366 CATT 639369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899602163816400