Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4241 116 5e-21 seq4254 107 3e-18 seq4164 100 4e-16 >seq4241 Length=1709304 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||||||||| || || | || || |||| |||| Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| |||||| || || |||||||| || || ||||| || Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| || |||||| | |||||| ||||||| | || || || || Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAAC 640206 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || || |||||||| Sbjct 640205 ATCCAGAAAGAATCAACACTCCATTTAGT 640177 >seq4254 Length=3256360 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 ||||||||| ||| |||||||| ||||||| ||||||||||| || ||||| || Sbjct 698769 TTTTCTTTGAGATCAGAAATATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATA 698828 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 | || || || || || |||| |||||| | | || |||| | || | ||| | Sbjct 698829 TTCTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGA 698888 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 |||||| || | ||||| |||||||| ||||| || | || |||||||||||||| Sbjct 698889 CTAAATCTCTCAATTAAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAG 698948 Query 18590 ACAT 18593 |||| Sbjct 698949 ACAT 698952 >seq4164 Length=697328 Score = 100 bits (110), Expect = 4e-16 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || || || ||||| || || ||||| ||||| |||| || Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| |||||| || || |||||||| || ||||| || || Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| || || || || ||||| || | ||||| || ||||||||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 357925 AT-TCAAAAG 357917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731829505682000