Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4164 154 3e-32 seq4241 127 4e-24 seq4196 105 1e-17 >seq4164 Length=697328 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| ||||| | ||||| ||||| ||||| Sbjct 358104 ATACCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCG 358163 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| ||||| | || || | |||||| || || || || |||||||||||||| ||| Sbjct 358164 GATAACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGT 358223 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||| ||||| || | ||||| | ||| Sbjct 358224 GGAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCG 358283 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || ||||||||||| | |||| | | ||| |||||||| Sbjct 358284 ACTTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 122 bits (134), Expect = 2e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATA 192362 ||| | || |||| ||| || | ||| | || | |||| || ||| || |||||||| Sbjct 357873 ATATTTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGA-ATATTATA 357931 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||| || || || || | || || | |||||| ||||| || || |||||||| ||||| Sbjct 357932 ATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATC 357991 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 ||| || ||||||||||| || || |||||| ||| ||||| || | || || | Sbjct 357992 AGGAGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGC 358051 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||| | || ||||| || || ||||| || || | || |||||||| Sbjct 358052 TTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 >seq4241 Length=1709304 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| |||||| | ||||||||| | || | ||||| ||| || || ||| Sbjct 640156 ATTCCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCA 640215 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| ||||| || || ||||||||||| | | || ||||| || Sbjct 640216 GAAAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGG 640275 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || |||||| ||||||||| ||| | || || | ||| Sbjct 640276 GGAATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCC 640335 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| ||||| | ||||| | ||| || ||||| Sbjct 640336 ACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 120 bits (132), Expect = 6e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| || | ||| ||||| ||||| || | || | || ||| || || || ||||| | Sbjct 639141 ACCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGA-ATGTTGTAATCGG 639199 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | |||| | || |||| ||||| |||||||||||||| | |||||||||||||| Sbjct 639200 AAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTG 639259 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || || ||||| || || ||||| ||| || || ||| | ||| || | || | Sbjct 639260 GAATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAA 639319 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| || || |||||||| || || | ||| || | || ||||||||| Sbjct 639320 CTTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 >seq4196 Length=1840941 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| || | || ||| |||| |||| ||||| ||||| ||||| | || Sbjct 1068765 GATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATGAGTCG 1068706 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||||| ||||| ||||| || |||||||| || || ||| ||||| || | Sbjct 1068705 TTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCAATGGT 1068646 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | ||||| || || || ||||||||||| || | || || | ||| || || Sbjct 1068645 ATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAAAGATTTG 1068586 Query 192534 CAT 192536 ||| Sbjct 1068585 CAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984421409595750