Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4164 149 1e-30 seq4196 95.1 2e-14 seq4247 86.0 1e-11 >seq4164 Length=697328 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| ||||| | ||||| ||||| ||||| Sbjct 358104 ATACCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCG 358163 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| |||| || | |||||| || || ||||| ||||||||||| || ||| Sbjct 358164 GATAACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGT 358223 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| ||| ||||| || || ||||| | ||| Sbjct 358224 GGAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCG 358283 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || ||||||||||| | |||| | | || |||||||| Sbjct 358284 ACTTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 || |||| | || |||| ||| || | ||| | || | |||| || || |||||| Sbjct 357869 TTACATATTTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATT 357928 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 |||||| || |||| || |||| || | |||||| ||||| ||||| |||||||| || Sbjct 357929 ATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTG 357988 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||||||||| || || |||||| ||| ||||| || || || || Sbjct 357989 ATCAGGAGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGA 358048 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| ||||| | || ||||| || || ||||| || || | ||| |||||||| Sbjct 358049 TGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 104 bits (114), Expect = 4e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| | || || ||||| || || | |||||| |||||| || || Sbjct 358332 ATACCACCGCGAAGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCG 358391 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | |||||| || ||||||||||| ||||| || || || Sbjct 358392 GAGAGTGTGCGACCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGA 358451 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || |||||| ||| ||||| || || || |||| || Sbjct 358452 GGGATTCCTTCCTTGTCCTGAATTTTAGCTTTGACATTTTCAATTGTGTCCGACGCCTCA 358511 Query 172020 ACTTCTAGAGTAATGGTTTT 172039 |||||| || ||||| || Sbjct 358512 GCTTCTAATGTGATGGTCTT 358531 >seq4196 Length=1840941 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| |||||||| | || ||| | || |||| ||||| ||||| || || | || Sbjct 1068764 ATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATGAGTCGT 1068705 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || ||||| ||||| || |||||||| || || ||| ||||| || ||| Sbjct 1068704 TGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCAATGGTA 1068645 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||||| || || || ||||||||||| || | || || | || || ||| Sbjct 1068644 TCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAAAGATTTGC 1068585 Query 172068 AT 172069 || Sbjct 1068584 AT 1068583 >seq4247 Length=3167485 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| | || || ||||||||||| |||| ||||| ||| || || ||||| Sbjct 1136620 ACCACCTCGCAAGCGCAAAACTAAATGTAACGTAGATTCTTTCTGAATGTTGTAGTCTGA 1136561 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || | | || |||||||| || |||||||||||||| || ||||| || || || Sbjct 1136560 CAGAGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAAATTAACCTTTGTTGATCTGGCGG 1136501 Query 171962 TATTCCT 171968 |||||| Sbjct 1136500 AATTCCT 1136494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905083445541000