Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3761 131 5e-25 seq4288 120 9e-22 seq4247 84.2 6e-11 >seq3761 Length=173619 Score = 131 bits (144), Expect = 5e-25 Identities = 205/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| || || ||||||||||| |||||||| || || ||||| || || ||| Sbjct 137019 TCCATAGCTTTTATCAAACGACGCTGGATATAACCGGTCTCAGCCGTTTTCACGGCGGTA 137078 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||||||||| ||||| ||| | | ||| || ||| || || Sbjct 137079 TCGATGAGACCTTCACGACCACCCATCGCATGAAAGTAGAACTCGGATGG-CGTAAGACC 137137 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | || |||| || ||||| || | ||| ||| || ||| |||| | || Sbjct 137138 AGCGAGATATGAATTCTCGACAAAACCGCGTGACTCAGGCCCATAGTCATCCTTGATGAA 137197 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||||||| ||| || || | |||| | || ||||| || || |||||||||||||| Sbjct 137198 ATGTGGCAAGGTTCTTTTACGAAAGCCAAAGGGTATACGTTTACCCTCAACGTTCTGCTG 137257 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || | || | ||| | ||| || || |||| | |||||| ||||| Sbjct 137258 GCCTACACAAGCAATAACCTGTGAGATGTTTATGTTGGAGCCCTTCGAGCC 137308 >seq4288 Length=702577 Score = 120 bits (132), Expect = 9e-22 Identities = 173/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || ||||| ||||| || || |||||||| || || ||||||||| | | Sbjct 276563 AAACAAATCTCTGACACGTCGAGCACCTTGACCAACAAGGATCTCATCAAATTCAGGACC 276622 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | ||| |||| ||||| |||| ||||| || || ||||| | ||| | | |||||| Sbjct 276623 TGCTACATGAAAGAATGGTACACCGGCTTCTCCAGCAACTGCACGCGCTAATAATGTCTT 276682 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC---AGCAGA 289265 |||||||| ||||| || |||||| ||||| || || | ||| | || |||||| Sbjct 276683 TCCTGTTCCTGGTGGACCAACTAATAATACTCCTTTCGGCAACTTTCCGCCGAGAGCAGA 276742 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||| ||||| |||| ||||||||||| | | | ||| || | ||||||||| Sbjct 276743 ---AAATTTATCAGGATTCTTCAAAAATTCTACTACATTCAAAAGCTCTTGTTTTGCCTC 276799 Query 289326 ATC 289328 || Sbjct 276800 GTC 276802 >seq4247 Length=3167485 Score = 84.2 bits (92), Expect = 6e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| ||||| || | | |||||| | || | || || || | | Sbjct 985310 CCAACTGCATCAATTTCATCAATAAATAATATACACGGTGCATGCTTTCGTGCCATAGAA 985369 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | ||| | ||| | |||| ||| ||| |||| || | ||||| ||| | Sbjct 985370 AACATATCGCGTACTCTGGAAGGGCCAACACCCACAAACATCTCCAAGAATTCTGAACCT 985429 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 |||||| ||| || | |||||| ||||| || ||| || | || | | || ||| Sbjct 985430 GATACTGTAATAAAGGGTACATTCGCTTCACCAGCTGTAGCTTTAGCTAACAAAGTTTTA 985489 Query 289210 CCTGTTCCAGGTGGTCCCTCTAA 289232 || || ||||| || |||| ||| Sbjct 985490 CCGGTACCAGGAGG-CCCTGTAA 985511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471730006155365