Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4241 152 5e-32 seq3895 141 8e-29 seq4164 120 3e-22 seq4196 116 3e-21 >seq4241 Length=1709304 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| || || || ||||| || || | Sbjct 639368 ATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTCG 639309 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| || ||| || || || |||||||| || || || || |||||| Sbjct 639308 GATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCAA 639249 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||| |||||||| || ||||||||||| || |||| | || ||||| ||| Sbjct 639248 CAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAAC 639189 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| ||||| || || ||| | || ||||| Sbjct 639188 ATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639142 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || ||||| || || || || || ||||| | Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||||| |||||| || || || ||||||||||| || || || ||||| Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||||||||| || || ||| |||| ||| |||| | || || || ||| Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAAC 640206 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| ||||| || || || |||| | || ||||| Sbjct 640205 ATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGG 640159 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || |||||||| ||||| | Sbjct 640157 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAAACCATCACTCTCGAAGTCGAAGCTTCA 640098 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||||| |||||| ||||| |||||||||||||| || || |||||||| Sbjct 640097 GACACTATAGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGCATTCCACCCGATCAG 640038 Query 24824 CAACGTTT 24831 || ||||| Sbjct 640037 CAGCGTTT 640030 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||||| |||||||| || ||||| ||||| || |||| | || ||||| Sbjct 639479 CAGCAGCGTTTAATCTTTGCTGGCAAACAACTGGAAGACGGCAGAACTCTTTCCGATTAC 639420 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| ||||| ||||| ||||| || || ||| | || ||||| Sbjct 639419 AACATTCAAAAAGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639370 >seq3895 Length=328041 Score = 141 bits (156), Expect = 8e-29 Identities = 209/293 (71%), Gaps = 11/293 (4%) Strand=Plus/Minus Query 138947 CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAG 139006 ||| |||||||||| | || |||||||||| ||| | |||||| || ||| | || | Sbjct 5962 CTTTGATAGGATAAAAATTAACATCGATGACTTTATCTAAATTACGGGTGACGATTTTTG 5903 Query 139007 TCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACA 139065 || || ||||| | ||||||||| | || ||| || | | || Sbjct 5902 -CGACTGTTTTAAGTTTATCAAAATCGAAAGTT------TTGGTATCTGCA---TTAACG 5853 Query 139066 AATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTAT 139125 || | |||||| || || || | |||||| || || ||||| || || | |||| Sbjct 5852 AACATATTGACAGCGATAGAAGCCAAGTTGCATACAGCGACTTCTTCAGGACTGGAGTAT 5793 Query 139126 TCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTT 139185 ||||||||||||| || || || || || |||||||| |||| || ||| ||||| | Sbjct 5792 TCGACAATTTCGGTGCATAAGTTGCTGCATTTGATCGTGCCTAGATGTTGATGATTCGAT 5733 Query 139186 TTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||||| |||||| |||||||||||||||||| ||||| |||||||| ||||| Sbjct 5732 TTTCGATTACAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTG 5680 >seq4164 Length=697328 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||| || || || || || | ||||| ||||| | Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || || || |||||||||||||| ||||| ||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || ||||| || ||||| | | |||| |||||||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 |||||||||||||| ||||| ||| Sbjct 357925 ATTCAAAAGGAATCTACACTTCAC 357902 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | | ||| || || |||||||| || || || ||||| ||||| | Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| || || |||||||| ||||| || || || |||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || ||||| ||||| || || || ||| | || ||||| || Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAAT 358154 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || | || ||||| Sbjct 358153 ATACAAAAAGAATCAACTTTGCATTTGGT 358125 >seq4196 Length=1840941 Score = 116 bits (128), Expect = 3e-21 Identities = 143/194 (74%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | || || || || |||||||| || || ||||| ||||| ||| Sbjct 1068580 ACCATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCC 1068639 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 |||| || | |||| || ||| ||||| ||||| || || ||||| || || ||| Sbjct 1068640 TCCGATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGAT 1068699 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | ||||| || || ||||||||||||||| | | | |||||||| Sbjct 1068700 CAGCAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTAC 1068759 Query 24881 AACATTCA-AAAGG 24893 || || || ||||| Sbjct 1068760 AATATCCAGAAAGG 1068773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449871477820600