Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4254 260 1e-64 seq4241 96.9 3e-15 >seq4254 Length=3256360 Score = 260 bits (288), Expect = 1e-64 Identities = 324/444 (73%), Gaps = 0/444 (0%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||||||||| |||| ||| | ||||| | ||| || | | || || |||| Sbjct 588717 CGGCGGGTTCTTCAAGATGTACGTGTTCAACTTGTGATTGCTCTCAAGAAGACCATGATG 588658 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 ||||| |||||||||||||| |||| | |||||| | | || || || || || Sbjct 588657 CCCGCAGGCTTTGCAGCCCTGCGAGATCGTTCCCTTTTTTGAGCTGACCATTAGTTCGGT 588598 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 ||||| || || || |||| || | || |||| ||||| |||||||| | | ||| Sbjct 588597 TTCCGGATTATCGCAAGCCGGGCAAAGAACGTACTTTCGGATAAAACCATCCAATAAGTC 588538 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGAC 34442 || | || || ||||| ||||||||||||||||| |||||||| ||| | || | Sbjct 588537 TTGCAGTTTCGTGGCATCGTGTGAGCCGTTGACGATGAAACGTTCGTTCTTGAAGTCAAA 588478 Query 34443 CTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCC 34502 ||||| |||||||| ||||| || |||||||| || ||||| || | |||||||| || Sbjct 588477 TTGCGTCTGCGCGCCTAGCTCACAACCGAAGTATTTGGTCGGATAGGTAGCCGGACGACC 588418 Query 34503 AAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCC 34562 | |||||| || | || |||||| ||||| || |||||||| || || || || || Sbjct 588417 GATCGCCTTCGCCACGTCTACCATGTTTACGATAACTGTCTTGATACCATTCCCTTTGCC 588358 Query 34563 TTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCG 34622 ||| ||||| || ||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct 588357 TTCCACCTTCGCCTGGATCCGCGGCATCTTGTAGCGATAGAAAGCGTCGCTAACATTGCG 588298 Query 34623 GTTAACGTTCACAGTCCCCATCGT 34646 ||||||||||| ||||||| || Sbjct 588297 ATTAACGTTCACGCTCCCCATGGT 588274 >seq4241 Length=1709304 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || | || || |||||||| ||| | ||| ||| || Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| || ||| |||||||| ||| | || ||||| Sbjct 639309 GGATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCA 639250 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| || ||||||||||| || | |||||| | | |||||||| Sbjct 639249 ACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAA 639190 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| ||||| || | ||| | || ||| |||| || || || Sbjct 639189 CATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||||| | |||||||| ||||| |||||| | || || ||||| || || | || | Sbjct 640394 AGATTCATCATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTG 640335 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 || || || || | | | |||||| || ||| ||||||||||| | ||| Sbjct 640334 GAAGCTTCTGACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCC 640275 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 ||||| ||| | || || | ||| || || ||| |||| |||| |||||| | | Sbjct 640274 CCAGATCAGCAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCT 640215 Query 110444 GATTACAACATTCAAAAAGAATCTAC 110469 || |||||||| || |||||||| || Sbjct 640214 GACTACAACATCCAGAAAGAATCAAC 640189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412818228649985