Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4063 120 5e-21 >seq4063 Length=1308840 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||| || ||||| || || || || |||||| |||||| |||||| ||| | Sbjct 344590 TATTTGGTAACCGCCTTCGTTCCTTCACTAACAGCGTGCTTGGCCAACTCGCCGGGCAGG 344531 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || | ||||| ||||| ||||| || | ||||||| ||||||||| | | Sbjct 344530 AGAAGCCTTACGGCAGTCTGAATCTCCCGAGATGTGATCGTGGAGCGCTTGTTGTAGTGA 344471 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| || ||||||| | ||||| |||| || || || ||||| |||||| Sbjct 344470 GCCAGTCGTGACGCCTCGGCCGCAATGCGCTCGAACACATCATTAACAAAGCTATTCATG 344411 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||||| || |||||| || |||||||| | |||||||||| Sbjct 344410 ATGCTCATAGCCTTGCTGGAGATTCCGGTGTCGGGATGAACCTGCTTCAACACCTTGTAA 344351 Query 1485712 A 1485712 | Sbjct 344350 A 344350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915752290164155