Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4196 111 1e-19 seq4241 93.3 3e-14 seq4164 89.7 3e-13 >seq4196 Length=1840941 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| || || || || || || |||| |||| ||||| || || || |||||||| Sbjct 1068770 TTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 1068711 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||||||||| || | || | |||||||| || | || || |||||| | | Sbjct 1068710 AGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCA 1068651 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || |||||| || || | ||| ||||| || |||||||||||||| |||||| Sbjct 1068650 ATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAAAG 1068591 Query 34970 ATCTGCATG 34978 || |||||| Sbjct 1068590 ATTTGCATG 1068582 >seq4241 Length=1709304 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34774 GTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTG 34833 ||||| ||| ||||| |||||||| || || || || | | | || ||||| || Sbjct 639165 GTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCCAGCTG 639224 Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 || || || ||||| | || || || || | || | ||||| ||||| | ||||| Sbjct 639225 TTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGAATTTT 639284 Query 34894 TTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGT 34953 ||||||| | |||| | || ||||| || |||| ||| ||||| ||||| || Sbjct 639285 GGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTTTCCTGT 639344 Query 34954 GAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| || ||||||||||| Sbjct 639345 GAGTGTCTTGACGAAGATCTGCAT 639368 >seq4164 Length=697328 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || || || |||| || | ||| ||||||||||| || || || | Sbjct 358967 TTCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTG 359026 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | |||| |||| || || |||||||| ||||| |||| || ||||||||| | | Sbjct 359027 ACAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTG 359086 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || ||||| || | || ||| || || || || || | ||| ||||| Sbjct 359087 GGATGCCTTCCTTATCCTGGATCTTTGCCTTTAC--ATTCTCGATAGTATCAGAAGCCTC 359144 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | |||||||| || || || | ||||| || || ||||||||| Sbjct 359145 AACTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCATG 359196 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 |||||| || | | || || || ||||||| || ||||| ||||| ||||| || Sbjct 357875 ATTTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATC 357934 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 || | |||| | || || ||||| ||||| ||||| |||| || ||||| || | Sbjct 357935 GGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGG 357994 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCC 34924 || | || || ||||| | ||||| |||||| || || || | || || Sbjct 357995 AGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGAC--ATTCTCAATTGTGTCCGATGCT 358052 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | || ||||||||||| || | ||||| || ||||||||||| Sbjct 358053 TCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325674362225255