Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4164 131 3e-25 seq4241 120 5e-22 >seq4164 Length=697328 Score = 131 bits (144), Expect = 3e-25 Identities = 156/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || ||| |||| | || || ||||| || ||| | || || ||| ||| | Sbjct 358332 TGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA- 358274 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| ||| ||||| ||| || ||||| |||||||| |||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | ||||| || || |||||| | || || |||||||| | ||||| ||| Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAAT 358154 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 |||||||||||||| ||| | ||||| || Sbjct 358153 ATACAAAAAGAATCAACTTTGCATTTGGT 358125 Score = 100 bits (110), Expect = 4e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | || || ||||||||||| || || || | || || ||| ||| Sbjct 358104 TGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG- 358046 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| |||||| || |||||||| ||||| || ||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | ||||| || || |||||| | || || | | || || | ||||||||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| ||||| || Sbjct 357925 ATTCAAAAGGAATCTAC 357909 >seq4241 Length=1709304 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || ||||||||||| ||| |||| || ||| | | Sbjct 640384 TGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCTG 640325 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| |||||| || |||||||| ||||| || ||||| | Sbjct 640324 ACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAGC 640265 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || || || || ||| ||||| | | || || || | Sbjct 640264 AACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAACA 640205 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| || ||||||||||| | || | ||||||| Sbjct 640204 TCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGG 640159 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||| | ||||||||||| || || |||| || || | | Sbjct 639367 TGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTCGG 639308 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| || ||| ||||| || ||||| ||||||||||| ||||||| Sbjct 639307 ATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCAAC 639248 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || ||||| | || || ||||| | | ||||| || | Sbjct 639247 AGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAACA 639188 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAAT 146262 | ||||| ||||| || | || ||||| |||||| | | |||||| ||| Sbjct 639187 TTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGGTGAAT 639137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786120753213400