Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4164 141 7e-29 seq4241 131 1e-25 seq4196 104 2e-17 >seq4164 Length=697328 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || ||||||||||| || || ||||| | | || || Sbjct 358118 ACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCC 358177 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| || || | |||||||| || ||||| || |||||||| || || Sbjct 358178 GTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTT 358237 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||||||| |||| | ||||| || ||| ||||| ||||| | Sbjct 358238 GTCTTG-AATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGA 358296 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| | ||| | ||||| |||||||| Sbjct 358297 TCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 140 bits (154), Expect = 2e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || ||||| |||||||| |||||||| | | |||||| || ||||||||| Sbjct 357903 TGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGT 357962 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || ||||| | |||||||| |||||||| || ||||| || |||||||| || |||||| Sbjct 357963 TTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTG-AATTTT 358021 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||||||| | || | ||||| || ||| ||||| | || || || || || || Sbjct 358022 AGCTTTGACATTCTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGT 358081 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || |||||||| Sbjct 358082 TAAAGTCTTGACGAAGATCTGCAT 358105 Score = 134 bits (148), Expect = 1e-26 Identities = 126/158 (80%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | ||||| ||||||||||| || || ||||| || || Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||||||| |||| | || || ||| |||||||| | ||| | Sbjct 358872 GTCTTG-AATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGA 358930 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||| || ||||||||||| ||||| ||||||||| Sbjct 358931 TGGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || || ||||| ||||| || || || | | |||||| || ||| Sbjct 358353 ACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGACCGTCCTCG 358412 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| || ||| | || || || ||||||||||| || || || || ||||| || Sbjct 358413 AGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTG- 358471 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGA 29729 |||||| | ||||||| |||| | ||||| || Sbjct 358472 AATTTTAGCTTTGACATTTTCAATTGTGTCCGA 358504 >seq4241 Length=1709304 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || ||||| |||||||| ||||||||||| ||||| | || || | || || Sbjct 639160 ACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCC 639219 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || |||||||||||| | || || | || ||||| || ||||| ||||||||||| || Sbjct 639220 AGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTG- 639278 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | |||||| |||||| || || ||| || |||||||| || || ||||| Sbjct 639279 AATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTT 639338 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || | || || || || ||||||||| Sbjct 639339 TCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Score = 104 bits (114), Expect = 2e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || ||||| || ||||||||||| ||| || | ||| ||| |||||| ||| Sbjct 640036 TGCTGATCGGGTGGAATGCCTTCTTTGTCTTG-AATCTTAGCTTTTACATTTTCTATAGT 640094 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| ||| ||| ||||| ||||| || |||||||| || | || || ||||| ||||| Sbjct 640095 GTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGATCTG 640154 Query 29784 CATT 29787 |||| Sbjct 640155 CATT 640158 >seq4196 Length=1840941 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || || || ||||| | | ||||| ||| || || ||||||||||| | | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 | | || |||||||||||| ||||| ||||| || ||||| ||| || | ||||||| || Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTG-AATCTTGGCTTTGACATTT 1068654 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || || || ||||| || || || || ||||| || || | ||| || ||| Sbjct 1068653 TCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACA 1068594 Query 29776 AATATCTGCAT 29786 || || ||||| Sbjct 1068593 AAGATTTGCAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385197392379945