Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq4296 136 5e-27 >seq4296 Length=1824142 Score = 136 bits (150), Expect = 5e-27 Identities = 161/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672 || ||||| ||| |||| ||||| ||||| || | ||||| |||| |||| |||||| Sbjct 1062703 GAGCTTTTGTGGTTTATCAAAGGATCAACAAATGCCAAACACTTAACAGATAAGGGTGTT 1062762 Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 171732 | | ||| |||| ||| |||| || | ||||| |||| ||||| || ||||| ||| Sbjct 1062763 CATATCTGGGATGAAAATAGTTCACGAGCTTTTTTGGATTCTTGCGGCTTCACTGATAGA 1062822 Query 171733 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATAT 171792 | ||||||||||| || || ||||||| ||||||||| | || || ||| ||||| Sbjct 1062823 GAGGAAGGTGATTTGGGGCCTGTTTATGGCTTTCAATGGCGGCACTTTGGTGCTGAATAT 1062882 Query 171793 ATCGACTGTTATACAGATTACACAGGACAAGG-AGTG 171828 | || | ||||||||||| |||||||| |||| Sbjct 1062883 AAAGATATGCACACAGATTACACGGGACAAGGTAGTG 1062919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628494705907200