Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4203 297 1e-74 seq4080 196 4e-44 seq4114 132 4e-25 seq3947 100 2e-15 seq4297 89.7 4e-12 >seq4203 Length=1196433 Score = 297 bits (328), Expect = 1e-74 Identities = 837/1264 (66%), Gaps = 30/1264 (2%) Strand=Plus/Plus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 ||||||||||||| | ||| || || ||||||||||| || || || || | || || | Sbjct 874602 TACCATTGGCATCGATATCGAAGGTAACTTCAATTTGCGGCACACCCCTAGGCGCTGGAG 874661 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || ||| | | ||| | || || |||| ||||| || || | | || ||| | Sbjct 874662 GTATTCCTGTTAGTTCGAATTTGCCAAGGATATTGTTATCCTTGGTCATTGCTCTTTCTC 874721 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 |||| | | ||||||| ||| | | |||||| || ||||| || ||||| ||||| Sbjct 874722 CCTCATAGACTTGGATAAGCACTCCCGGTTGATTGTCAGAATATGTGGTAAA-CGTCTGG 874780 Query 281622 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || || || || ||||| || | || | ||||||| | ||| ||||| Sbjct 874781 GTCTGCTTTGTTGGTATCGTCGTGTTCCTCTTGATCAAGGTGGTCATGACACCGCCAGCG 874840 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| | || | ||||| || || | || | | || ||| | ||| Sbjct 874841 GTCTCAATACCCAATGACAACGGAGTTACGTCCAGCAGAAGCAGATCTTGGA---CTTCC 874897 Query 281741 TCAGTTTGACCAAC---AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 || | || | || | |||||||| || |||| || || ||||| || || |||||| Sbjct 874898 TCGGATTTATCACCGTGTAGAATAGCCGCCTGAACTGCTGCGCCATAAGCGACGGCTTCA 874957 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 281856 || ||||| | || | || | || ||| || ||||| |||| ||||| || || | Sbjct 874958 TCTGGATTGATAGACTTGTTCAATTCTTTGCCGTTGAAGAAATCTTGAAGTAACTTCT-G 875016 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | ||| || || | | || || || |||| || || || || || | || || Sbjct 875017 GATCTTTGGTATTCTGGTAGAGCCACCGACTAGAACGATGCTGTGAACGTGAGCCTTGTC 875076 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTG 281975 || |||| ||| | | || || ||||||||||| ||| || |||||||| | Sbjct 875077 CATCTTTGCGTCCCTAAGCGCCTTCTCCACGGGTTCAAG-GGTGCTCCTGAACAAGTCGG 875135 Query 281976 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAA 282033 || || || || ||| | || || || || ||| | || || ||||| || ||||| Sbjct 875136 CGCAGAGCTCCTCAAATCTGGCCCTGGT--GATCGACGTGTAGAAGTCAATACCCTCGAA 875193 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 ||| || |||| ||||| | | || ||||| ||| || | | || || | || Sbjct 875194 CAACGAGTCAATCTCAATGCTTGCCTGCGTCGATGAACTTAACGTTCTCTTCGCTCTCTC 875253 Query 282094 ACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTTATAT 282151 || || ||||| || | || || | |||||| |||| |||||||| |||| ||| Sbjct 875254 GCAGGCAGTCCTCAGACGTCTCAAAGCCCTTTTGTTGAT--GCTCAAATCTTTTTTGTAT 875311 Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| |||| ||| | | || | ||||||||||| ||||| || || Sbjct 875312 TTCCTCTTGAACTCTTGTACAAAGTGATTCACCATTCGATTATCAAAGTCTTCGCCACCG 875371 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | |||| || | |||| | || | || | |||||||||| || || | Sbjct 875372 AGATGTGTATCGCCGGCTGTAGACTTCACCTCAAAGATACCATCTTCAATAGTCAGGATC 875431 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG- 282330 | ||||| ||| ||||| |||| ||| ||||| | ||||| |||| | || || Sbjct 875432 GACACATCGAAGGTACCACCGCCCAAATCGAAAATCAAGACATT--TTTC--TCTCCTGC 875487 Query 282331 -GTTT--TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387 |||| ||||| ||||| ||||| | || || || || || || || || ||||| | Sbjct 875488 AGTTTTCTTATCGAGACCGTACGCTATCGCGGCTGCCGTAGGCTCGTTTATTATTCTGAG 875547 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 |||||| || |||||||| || ||||| || || ||||| || || ||||| || || Sbjct 875548 AACATTCAGGCCAGCAATAGCGCCAGCATCCTTCGTTGCTTGCCTCTGAGAATCATTGAA 875607 Query 282448 ATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGT 282507 ||| || || ||||| || ||||||| ||||| ||| || | ||| || |||||| Sbjct 875608 ATAAGCTGGCACAGTGATGACGGCATTTGTTATAGTTTTGCCCAAATATGCTTCTGCTGT 875667 Query 282508 TTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTGGATT 282566 || ||||| || | | | ||| || || | || || || ||| | | ||| | Sbjct 875668 TTCCTTCATCTTCGTCAGGACCATGGAGGATACTTCCTC-GGGGAAGAAGGTCTTCATCT 875726 Query 282567 CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 || || ||| || || | | | ||| || |||| |||| | ||| | || |||| Sbjct 875727 CACCTTTATAAGACACCTTGATTTTTGGCTTGCCACCATCATTGACTACTGTGAACGGCC 875786 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 ||| ||||| || ||| || || || | || | |||||| || ||||||| Sbjct 875787 AATGCTTCATGTCACTTTGTACCGTTGTATCGTCGAAGCGACGACCAATCAAGCGTTTTG 875846 Query 282687 CATC 282690 |||| Sbjct 875847 CATC 875850 >seq4080 Length=441467 Score = 196 bits (216), Expect = 4e-44 Identities = 686/1067 (64%), Gaps = 8/1067 (1%) Strand=Plus/Plus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || || ||||| |||| | |||||||||||||| || || || | |||||| || ||| Sbjct 301495 GTAGACTTATCCACGGCGGAGACATTAAGAATACCGTTCGCGTCAATATCAAAGGTAACT 301554 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || || ||||| || || | | || || || || || | | |||| | |||| Sbjct 301555 TCGATCTGAGGAACTCCACGAGGTGCTGGCGGAATACCGCTAAGCTCAAATTTGCCCAAC 301614 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 || ||||||||||| | |||||||||||| | | ||| || || ||| Sbjct 301615 AAGTTGTTATCTTTAGTCATAGCGCGTTCACCCTCGTATACTTGAATCAATACGCCAGGC 301674 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 ||||| || | |||||||||||| | | | || || || || ||||| || Sbjct 301675 TGATTGTCGGCATAAGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTGTTCCTC 301734 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 | || | |||||| | ||||||||| || || | || | |||||| ||||| ||| Sbjct 301735 TTGATGAGCGCGGTCATGACACCACCAGCAGTCTCGATGCCCAAAGAAAGTGGAGTAACA 301794 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 281770 || | || | | || ||| | | ||| | | || |||||||| ||||| Sbjct 301795 TCGAGCAGAAGCAGATCTTGCACCTCTTCGGACTTGTCGCCGTGCAGAATAGCCGCTTGT 301854 Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 | || |||||||| || ||||| ||||||||||| | | || || || | || || Sbjct 301855 ACGGCCGCACCATACGCCACAGCCTCATCAGGATTGATGGATTTGTTAAGCTCCTTGCCG 301914 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAAT 281890 || || || | | ||||| | | || ||||||||| || | ||| || ||||| || Sbjct 301915 TTAAAGAAGTCTTGTAGAAGCTTTTGTATCTTAGGAATGCGCGTTGAGCCACCAACCAAG 301974 Query 281891 ACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGT 281950 || || ||||| | || | ||||||| |||| ||| || || || || ||| Sbjct 301975 ACGATATCATGGATTTGAGCCTTATCCATCTTTGCATCGCGCAACGACTTCTCGACAGGT 302034 Query 281951 TCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTG 282010 || ||| | | | || | || | ||| || || ||||| ||| || || | | | Sbjct 302035 TCGAGAGTACCGCGGAAGAGATCAGCACAGAGCTCCTCGAAACGAGCCCTGGTGATGGAG 302094 Query 282011 ACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 282070 || |||| ||||| ||| | || ||||| | || || | | || || ||||| Sbjct 302095 GTATAGAAATCTATTCCCTCGTATAAGGAATCGATCTCGATGCTGGCCTGCGTGGAAGAT 302154 Query 282071 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT 282130 || || | ||| || || || || || || || | || | || | ||| ||| | Sbjct 302155 GACAGAGTACGCTTGGCGCGCTCGCAGGCCGTGCGCAGACGACGGAGGGC--ACGCTTGT 302212 Query 282131 T--GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188 | | ||| || | || ||||| | |||||| || | || | | || | | Sbjct 302213 TCGAAGTCAGGTCCTTCTTGTATTTGCGCTTGAATTCCTGCACGAAGTGGTTGACCATGC 302272 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | ||||| || || ||||| ||||| | |||| || | ||| | | || | ||||| Sbjct 302273 GGTTATCGAAGTCCTCACCACCCAAGTGGGTATCACCGGCCGTGGACTTGACCTCGAAAA 302332 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 ||||| || | | ||| | | |||||| ||| |||||||| | ||| || || | Sbjct 302333 TACCATCCTCGATGGTCAAGATGGATACATCAAAGGTGCCACCACCAAGATCGAAGATCA 302392 Query 282309 GTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | || ||| || | ||| || || || ||||| ||||| | || ||||| || Sbjct 302393 GGACGTTCCGCTCGCCG--GTGGCCTTCTTGTCGAGACCGTACGCGATCGCGGCAGCGGT 302450 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || || | || ||||| | || | || | || || || || || || Sbjct 302451 GGGCTCGTTGATGATACGTAATACATTCAAGCCCGAGATGGTACCAGCGTCCTTGGTTGC 302510 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | || || ||||| || || || || || || || || |||| Sbjct 302511 CTGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATCACAGCAT 302557 >seq4114 Length=817478 Score = 132 bits (146), Expect = 4e-25 Identities = 151/202 (75%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | ||||| |||| ||||| ||||||||||| ||||| | Sbjct 549307 TTTATCTTCCTGTTTATCCATGCCATATGCAAGTGCAGCTGCAGTTGGTTCGTTAATTAC 549366 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | ||||| | || ||||| || ||||| || || ||||||| ||||||||| Sbjct 549367 ACGAAGCACATTCAATCCTGCAATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATC 549426 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT----TCTTTTCCAATATAAG 282497 ||||||||||||||| |||||||||||||||| | ||||| | ||| | ||||| Sbjct 549427 GTTAAAATATGCAGGTACAGTAATAACGGCATTTTTTACTGGAGTATTT----AAATAAG 549482 Query 282498 CGCTTGCTGTTTGTTTCATTTT 282519 | ||||||| |||||||| Sbjct 549483 CCGCAGCTGTTTCCTTCATTTT 549504 Score = 107 bits (118), Expect = 1e-17 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || |||||||| || |||||||||||||| ||||||| ||| |||| || || ||| Sbjct 549329 CCATATGCAAGTGCAGCTGCAGTTGGTTCGTTAATTACACGAAGCACATTCAATCCTGCA 549388 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| |||||||||| |||| || ||||||||||| ||||||||| Sbjct 549389 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATCGTTAAAATATGCAGGTACAGTA 549448 Query 86239 ATAACTGCTTTATTAATAGGTTTTTGTAAATA 86270 ||||| || || || | || | | |||||| Sbjct 549449 ATAACGGCATTTTTTACTGGAGTATTTAAATA 549480 >seq3947 Length=350172 Score = 100 bits (110), Expect = 2e-15 Identities = 130/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 637114 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 637170 ||||||| | || || |||| |||| ||| || ||||| || |||||||| | ||| Sbjct 76497 AAGAAAAGAGTAATCGTGGATTTTTCTAGTCCTAACATTGCCAAGGAAATGCACGTGGGA 76556 Query 637171 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 637230 |||||||| ||||| |||||||| || ||||| || | |||||| | |||||| Sbjct 76557 CATTTAAGGTCAACAATTATTGGAGACAGTATTTCAAGACTGTTAGAATATTTAGGACAC 76616 Query 637231 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 |||| | | |||||| | ||||| ||||| || ||||| |||||||| || || Sbjct 76617 AATGTACTAAGACTCAATCATATAGGTGACTGGGGTACACAATTTGGTATGTTGATAGC 76675 >seq4297 Length=562629 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 399295 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 399354 |||||||| ||||||||||| | |||||| |||| ||| |||||||| | || || Sbjct 50859 ATTTCTGTGTGGAATAATGGAAAAGGTATTCCAGTAGTAATACATAAAGAGGAAAACATG 50918 Query 399355 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 399414 | ||||| | ||||| ||||| | ||| | || || | ||||| || | | || Sbjct 50919 TATGTACCTACCATGATATTTGGTCATCTTCTGACATCATCAAATTATGACGATGAAGAA 50978 Query 399415 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 399466 |||||| |||||||| |||||||| ||| || ||||| ||| |||| Sbjct 50979 GAAAAAGTGACTGGTGGTAGAAATGGTTATGGTGCCAAGCTCTGTAACATTT 51030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740402350129770