Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4164 183 6e-41 seq4241 167 5e-36 seq4196 140 6e-28 seq4247 107 4e-18 >seq4164 Length=697328 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || |||| ||| |||||||| |||||||| ||||| | Sbjct 358105 TACCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGG 358164 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| ||| |||||||| ||||||||||| || || || | ||| ||||||||||| | Sbjct 358165 ATAACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTG 358224 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || ||||| ||||||||||| || || | ||| | Sbjct 358225 GAATACCTTCCTTGTCTTGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGA 358284 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| ||||| || || || | || ||||||| |||||||| Sbjct 358285 CTTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || |||||||| || || ||||||||||| || | | | | |||| Sbjct 357891 CGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGACAAAGTGCGACCG 357950 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||||||||| || || | ||| || ||||| ||||| |||||||| || Sbjct 357951 TCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTG 358010 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| || ||||| ||||| ||||| || || | ||| |||||||| || || Sbjct 358011 TCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATG 358070 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| || ||||| || || |||||||| Sbjct 358071 GTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 150 bits (166), Expect = 4e-31 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||||||||||||| ||||| | ||||| |||||||| || || |||||||| Sbjct 358813 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTTG 358872 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || ||||| ||||||||||| ||||| || |||||||||||||| || Sbjct 358873 TCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGATG 358932 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || || || ||||| ||||||||| Sbjct 358933 GTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| || || ||||| ||||| ||||| ||||| ||||| || | | | || ||| Sbjct 358984 AGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCT 359043 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || |||||||| || || | | || || ||||| || || ||||||||||| Sbjct 359044 TCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCC 359103 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||||| |||||||| || || |||||| || || ||||| | |||||| || Sbjct 359104 TGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTT 359163 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| || || |||||||| Sbjct 359164 TTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 127 bits (140), Expect = 4e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || ||| || |||| || || |||||||| ||||| || || || || | | |||||| Sbjct 358349 CAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGACCGTC 358408 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || ||||||||||| ||||| |||| || || ||||| ||||| ||||||||||| || Sbjct 358409 CTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCCTTGTC 358468 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| || ||||| ||||||||||| || || Sbjct 358469 CTGAATTTTAGCTTTGACATTTTCAATTGTGTC 358501 >seq4241 Length=1709304 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | |||||| ||||| || || || ||||||||||| || || || ||||| Sbjct 640159 CCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAA 640218 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||| | || |||||||||||||| || | ||| |||||||| || Sbjct 640219 AGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGA 640278 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || ||||| || |||||||||||||| || || ||| || ||| || Sbjct 640279 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACC 640338 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | ||| || || || || || | || || ||||| || ||||| || Sbjct 640339 TCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATGAT 640388 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | || | ||||||||| || || ||||| || || || || ||||| || Sbjct 639141 ACCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGA 639200 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| |||| |||||||| || ||||| ||||||||||||| | |||||||| || || Sbjct 639201 AAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGG 639260 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || || || ||||| || ||||| || ||||| || ||||| || || || Sbjct 639261 AATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAAC 639320 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | || || || || ||||| | ||||| || || ||||||||| Sbjct 639321 TTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||| || || || ||||| || ||||||||||| |||||||||||||| || || Sbjct 640036 TGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCTATAGTG 640095 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || || ||| ||||| | ||| || || |||||||| | ||||| ||||| |||||| Sbjct 640096 TCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGATCTGC 640155 Query 82809 ATT 82811 ||| Sbjct 640156 ATT 640158 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||||||||| || || |||||||| || || || ||||| || ||| |||| |||||||| Sbjct 639387 AACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTC 639446 Query 82661 TAGTTGTTTTCCAGCAAAGATTA 82683 |||||||| ||||||||||||| Sbjct 639447 CAGTTGTTTGCCAGCAAAGATTA 639469 >seq4196 Length=1840941 Score = 140 bits (154), Expect = 6e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| ||||| ||||| || ||| | | || || || || ||||| ||||| |||| Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | |||| ||| ||||| || || ||||| ||||||||||||||||| ||||| ||||||| Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| ||||| | ||||| || | || || || || || || | ||||| |||| Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 82801 ATATCTGCAT 82810 | || ||||| Sbjct 1068592 AGATTTGCAT 1068583 >seq4247 Length=3167485 Score = 107 bits (118), Expect = 4e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| ||| |||| |||||| || | |||||||||||||| || || || || || Sbjct 1136620 ACCACCTCGCAAGCGCAAAACTAAATGTAACGTAGATTCTTTCTGAATGTTGTAGTCTGA 1136561 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | || || ||||| | ||| || |||||||| |||| |||||||||||||| || Sbjct 1136560 CAGAGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAAATTAACCTTTGTTGATCTGGCGG 1136501 Query 82703 TATTCCT 82709 |||||| Sbjct 1136500 AATTCCT 1136494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || |||||||| ||||| || ||||| ||||||||||||||||| | || || || Sbjct 1136347 CCCTCCTTATCCTGAATTTTCGCTTTCACATTTTCAATCGTATCCGACGCCTCGACCTCA 1136288 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || || ||||| ||||| | ||||| ||||| ||||||||||| Sbjct 1136287 AGGGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAAATCTGCATTAT 1136241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981768767474655