Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4164 122 8e-23 seq4196 93.3 4e-14 >seq4164 Length=697328 Score = 122 bits (134), Expect = 8e-23 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || ||||| ||||||||||| || ||| | | | || || || Sbjct 358990 AAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCA-TCTTCAAG 359048 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | ||||||||||| || |||||||||||||| || ||| Sbjct 359049 CTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGAT 359108 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | ||| | || || | | ||| || |||| || | |||||| || Sbjct 359109 CTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTCCC 359168 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||| | || || |||||||||||||||| Sbjct 359169 GGTTAACGTCTTCACGAAAATCTGCATGG 359197 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/129 (77%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||||||||| |||||||| ||| | ||| ||| ||||||||| Sbjct 358356 AAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGAC-CGTCCTCGAG 358414 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || |||| | || |||||| || |||||||| ||||||||||| ||| Sbjct 358415 TTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCCTTGTC-CTGAA 358473 Query 133574 CTTTTGCTT 133582 ||| |||| Sbjct 358474 TTTTAGCTT 358482 >seq4196 Length=1840941 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| ||||||||||| | ||| | | | ||||| ||||| ||||| ||| | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCA-TCCTCCAGCTGTTTGCCAGCGAAG 1068714 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| || ||||| || || || || || ||||| || ||||| |||| | Sbjct 1068713 ATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTT 1068654 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| || |||| || ||| || |||| ||||| |||||| || || || || || || Sbjct 1068653 TCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACA 1068594 Query 133650 AAAATCTGCATGG 133662 || || ||||||| Sbjct 1068593 AAGATTTGCATGG 1068581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483392731379800