Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4164 147 1e-30 seq4241 111 1e-19 >seq4164 Length=697328 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | ||| ||||||||||| ||||||||||| Sbjct 358106 ACCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGA 358165 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| || | |||||||||||| |||||||| | ||| |||||| | || Sbjct 358166 TAACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGG 358225 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||||| | || |||| || | ||||| || ||| | Sbjct 358226 AATACCTTCCTTGTCTTGAATTTTC-GCTTTGACATTTTCAATTGTGTCTGATGCTTCGA 358284 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||||||||| || | ||| ||||||||||||||||| Sbjct 358285 CTTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCATA 358334 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| || || |||||||| | ||||| |||| || | ||||||||| || ||| Sbjct 357915 TCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAA 357974 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||||||||| | || | ||||||||||| |||||| | || |||| Sbjct 357975 ATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATTTT-AGCTTTGACATT 358033 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| || ||| || || | ||||| || || |||||||| || || || Sbjct 358034 CTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGAC 358093 Query 33738 AAAGATCTGCATA 33750 |||||||||||| Sbjct 358094 GAAGATCTGCATA 358106 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| | || |||||| || || ||||| |||||||||||||| |||| Sbjct 358350 AAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAGAGTGTGCGACCGTCC 358409 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||||||||||||||| || | ||||||||| | || | ||||| ||||| Sbjct 358410 TCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCC 358469 Query 33658 GCAATTTT 33665 |||||| Sbjct 358470 TGAATTTT 358477 >seq4241 Length=1709304 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | || ||||| || || ||||| || |||||||| || || Sbjct 640159 CCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAA 640218 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || ||||| || ||||| ||||| |||| ||| ||||||||| | || Sbjct 640219 AGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGA 640278 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| |||||| | || |||| || | ||||| | |||||| Sbjct 640279 ATACCTTCTTTGTCCTGAATTTT-AGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCAC 640337 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 640338 CTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || || || || ||| || ||||| |||||||||||||| || || | || Sbjct 639154 CGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639213 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| ||||| || ||||| || |||||||| ||||| | || | || |||||| Sbjct 639214 TCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTG 639273 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| | || || | || | ||| || | || || |||| ||||| Sbjct 639274 TCCTGAATTTT-GGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGAT 639332 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||||| | || || || ||||||||||| Sbjct 639333 GGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || || || || ||| |||||||| |||||||||||||| || || | || Sbjct 639382 CGTAAAACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639441 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 || |||| |||||| || ||||| || ||||||||||| Sbjct 639442 TCTTCCAGTTGTTTGCCAGCAAAGATTAAACGCTGCTG 639479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328685391758400