Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4241 134 3e-26 seq4164 105 2e-17 seq4196 86.0 1e-11 >seq4241 Length=1709304 Score = 134 bits (148), Expect = 3e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| |||||| | || |||||| |||||||||| | ||| Sbjct 640370 AAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCTGACACAATAGAAAAT 640311 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| ||||| || |||||||| ||| || || ||| | || ||||| Sbjct 640310 GTAAAAGCTAAA-ATTCAGGACAAAGAAGGTATTCCCCCAGATCAGCAACGTCTGATCTT 640252 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||||||||||||||| || ||| | | || |||||| |||||||||| || Sbjct 640251 TGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAACATCCAGAAAGAATC 640192 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || || | || || | |||||| Sbjct 640191 AACACTCCATTTAGTACTGCGTCTTCGA 640164 Score = 102 bits (112), Expect = 2e-16 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||||||||| ||||| | ||||| || ||| || Sbjct 639365 CAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTCGGAT 639306 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| ||||| || ||||| || ||| || || ||| Sbjct 639305 ACCATAGAAAACGTCAAAGCCAAA-ATTCAGGACAAAGAGGGCATTCCACCTGA---TCA 639250 Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | || || ||||| || || || ||| ||||||| || || ||| | |||||||||| Sbjct 639249 ACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAA 639190 Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | | || || || || || |||||| | ||||| ||||||| Sbjct 639189 CATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCG 639148 >seq4164 Length=697328 Score = 105 bits (116), Expect = 2e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | |||||||| || ||||| |||||||| ||| || ||| Sbjct 358102 CAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCGGAC 358043 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| ||| ||||| || |||||||||||| || || || Sbjct 358042 ACAATTGAGAATGTCAAAGCTAAA-ATTCAGGACAAAGAAGGAATTCCTCCTGATCAGCA 357984 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | || ||||| ||||| || | || || || | |||||| ||||||| || | Sbjct 357983 GAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAATAT 357924 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || || ||||| ||||||||||| | | |||||| Sbjct 357923 TCAAAAGGAATCTACACTTCACCTTGTACTTCGGCTTCGA 357884 Score = 104 bits (114), Expect = 6e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| | ||| ||||| || |||||||||||| ||||||| ||| || ||| Sbjct 358330 CAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCAGAC 358271 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| ||| |||||||| || ||||| ||| || || || Sbjct 358270 ACAATTGAAAATGTCAAAGCGAAA-ATTCAAGACAAGGAAGGTATTCCACCAGATCAACA 358212 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | || ||||||||||| || | ||||| || | || || |||||||||| | Sbjct 358211 GAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAATAT 358152 Query 206352 CCAGAAAGAGTCTACT 206367 || ||||| || ||| Sbjct 358151 ACAAAAAGAATCAACT 358136 >seq4196 Length=1840941 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||| | || || || || || || | ||| Sbjct 1068598 AAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCCGATACCATTGAAAAT 1068657 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| || || |||||| ||||| ||| |||| ||||| Sbjct 1068658 GTCAAAGCCAA-GATTCAAGATAAGGAGGGAATTCCACCGGATCAGCAACGACTCATCTT 1068716 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 ||| || || ||| |||| |||||| | ||| | | |||||||| ||||||||| Sbjct 1068717 CGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTACAATATCCAGAAAG 1068772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181750465043045