Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4241 95.1 1e-14 seq4164 86.0 6e-12 >seq4241 Length=1709304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| || || | | || || |||||||||||||| ||| | || | Sbjct 639154 CGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCG 639213 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | |||||| |||||||||||| || || ||||| ||||| Sbjct 639214 TCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTG 639273 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||||| | | ||| ||||| | || | Sbjct 639274 TCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATG 639333 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || || || | ||| |||||||| Sbjct 639334 GTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || ||||| | |||| ||||| || ||||||||||| | || | | Sbjct 640171 CGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCA 640230 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| || || | | |||| ||||| || |||||||| || || |||||||| Sbjct 640231 TCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCTTCTTTG 640290 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | || || | | ||||| || | || | Sbjct 640291 TCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTGATT 640350 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 ||||| ||||| |||||||| | || || ||||||| Sbjct 640351 GTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATGA 640387 >seq4164 Length=697328 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | |||| |||||||| || ||||| ||| | || || ||||| Sbjct 358124 AACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTC 358183 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| |||| | || | | |||||||||||| || || ||||| || || Sbjct 358184 AAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTG 358243 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | || || | | || ||||| | || | |||||| Sbjct 358244 AATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTT 358303 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || ||| ||| || |||||||| Sbjct 358304 ACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | || || || ||||| ||||| || || ||| || |||||| Sbjct 358986 AACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTC 359045 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || || | | || | |||||| || ||||| || |||||||| ||||| Sbjct 359046 AAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTG 359105 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| || | | || | |||||| | | ||| ||||||| || | ||||| Sbjct 359106 GATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTT 359165 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || | || || | ||||||||||||| Sbjct 359166 CCCGGTTAACGTCTTCACGAAAATCTGCATG 359196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583526762200