Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4164 111 1e-19 seq4196 98.7 9e-16 >seq4164 Length=697328 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||| |||| | || || ||| ||||||| | ||||||||||| Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || || || ||||| || || ||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| || ||| |||||||| ||||| | ||| | |||||||||| Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAAT 358154 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||||||||| || | ||||| || Sbjct 358153 ATACAAAAAGAATCAACTTTGCATTTGGT 358125 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || ||||| ||||| | ||||| | ||||| ||||| Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| |||||| || ||||| || || || || |||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| || || ||||||||||| || | | | | | | |||||| ||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 |||||||| ||||| || |||| Sbjct 357925 ATTCAAAAGGAATCTACACTTCA 357903 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || || || |||||||| ||| | || || ||||||| || || Sbjct 359199 CACCATGCAGATTTTCGTGAAGACGTTAACCGGGAAAACCATAACTCTCGAAGTTGAGGC 359140 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||||||||| | ||||| ||| || ||||| || || || || || || Sbjct 359139 TTCTGATACTATCGAGAATGTAAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGA 359080 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348 ||||| | | |||| || || || || || ||||||| | | ||||| ||| Sbjct 359079 CCAGCAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAAGATGGACGCACCTTGTCA--GAT 359022 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| || |||||||| | ||||| || | ||||| | || |||| Sbjct 359021 TACAATATTCAGAAGGAATCCACTCTCCATTTGGTTCTCAGATTACGTGGTGGAA 358967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||| |||||| | ||||| | ||||| || || Sbjct 358967 ATGCAGATTTTTGTCAAAACCTTAACGGGAAAAACCATCACTTTGGAAGTAGAGGCTTCA 358908 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| || || || ||||| || || |||||| Sbjct 358907 GATACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAG 358848 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 25330 ||||| | || | || || |||||||| |||||| Sbjct 358847 CAAAGGTTGATCTTCGCTGGAAAACAACTTGAAGAT 358812 >seq4196 Length=1840941 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | ||||| || || | || || ||| | ||||| |||| || || || Sbjct 1068579 CACCATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGC 1068638 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | |||||| || || | || ||| || ||| ||||| ||||| || || || || Sbjct 1068639 CTCCGATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGA 1068698 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||||| ||||||| | || |||||||| || || |||| | | | || ||||| Sbjct 1068699 TCAGCAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTA 1068758 Query 25351 CAATATTCAAAAAG 25364 |||||| || |||| Sbjct 1068759 CAATATCCAGAAAG 1068772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445068556706400