Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq4247 91.5 1e-13 seq4241 84.2 2e-11 >seq4247 Length=3167485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 |||||||||||| | |||| ||| ||||| ||||| |||||| | ||| || || Sbjct 1136507 GATCAACAAAGGTTAATTTTTGCTGGCAAGCAATTGGAAGATGGCAGGACTCTGTCAGAC 1136566 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||||| || ||||||||||| |||||||||| ||| | || ||||| || Sbjct 1136567 TACAACATTCAGAAAGAATCTACGTTACATTTAGTTTTGCGCTTGCGAGGTGG 1136619 >seq4241 Length=1709304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 |||||| ||||||||||| | ||| ||||| ||| | || || | ||| || || Sbjct 640301 AAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAGCAACGTCTGATCTTTGCTGGAAAG 640242 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 || || |||||| | |||| | || |||||||| || |||||||| ||||| ||| Sbjct 640241 CAGTTGGAAGATGGCAGAACTCTTTCTGACTACAACATCCAGAAAGAATCAACACTCCAT 640182 Query 106464 TTAGTATTGAGGTTACGAGGAGGA 106487 |||||| || | | ||||||||| Sbjct 640181 TTAGTACTGCGTCTTCGAGGAGGA 640158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402306823744160