Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4164 111 1e-19 seq4241 86.0 6e-12 >seq4164 Length=697328 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||||||||| || | |||||||| | || ||||| ||||| |||||||| | Sbjct 358967 TTCCACCACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTG 359026 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||||| || | || || |||||||| || || || ||||| ||||||||||| | | Sbjct 359027 ACAAGGTGCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTG 359086 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||||| ||| ||||||| ||| | | | | | || || | || | Sbjct 359087 GGATGCCTTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAA 359146 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || ||||| || || || || ||||| || |||||||| Sbjct 359147 CTTCGAGAGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| || || || ||||| || |||||||||| Sbjct 358107 CCACCACGGAGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGAT 358166 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| |||| || || || || || || || ||||| | ||| || || | ||| Sbjct 358167 AACGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGA 358226 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| ||| ||| |||| | | || | | ||||| | ||| || Sbjct 358227 ATACCTTCCTTGTCT-TGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGAC 358285 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||||||||||| || | ||| | ||||| |||||||| Sbjct 358286 TTCCAGAGTGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| || ||||||| ||| || || |||| || || || || || || || Sbjct 357915 TCCTTTTGAATATTATAATCGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAA 357974 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| | |||||| || | ||||| | || |||||| ||| ||| || || | | | Sbjct 357975 ATCAATCTCTGCTGATCAGGAGGAATTCCTTCTTTGTCC-TGAATTTTAGCTTTGACATT 358033 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | ||| || |||| ||||| || || || || ||||| || || Sbjct 358034 CTCAATTGTGTCCGATGCTTCAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGAC 358093 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 358094 GAAGATCTGCAT 358105 >seq4241 Length=1709304 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||||||||||||||||| | |||| |||| |||||||| || || ||||| Sbjct 639178 TCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAG 639237 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || || ||||| || || | |||| || ||| |||||| ||| ||| || || | | Sbjct 639238 ATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCC-TGAATTTTGGCTTTGACGTT 639296 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || | || || || | ||||| ||||| || || | || || || Sbjct 639297 TTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGAC 639356 Query 35725 AAATATCTGCATTC 35738 || |||||||||| Sbjct 639357 GAAGATCTGCATTC 639370 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | | |||| | || |||| |||||| || ||||| Sbjct 640195 TCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAG 640254 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGT 35664 |||| || ||||| || | |||| | || |||||| ||| ||| |||| | | | Sbjct 640255 ATCAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCC-TGAATTTTAGCTTTTACATT 640313 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||||||||| | ||||| ||||| || || | ||||||||| Sbjct 640314 TTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCAC 640373 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 640374 AAAGATTTGCAT 640385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450767425796600