Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4164 145 8e-30 seq4241 136 4e-27 seq4196 86.0 6e-12 >seq4164 Length=697328 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| |||| || || | || ||||| || || |||||||||||||| || || ||| Sbjct 357876 TTTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCG 357935 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || ||| ||||| ||||| || || |||||||| | ||||||||| || Sbjct 357936 GACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGA 357995 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| || |||||||| |||||| || | |||||| || | ||| Sbjct 357996 GGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTTCA 358055 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || ||||| || || |||||||| || ||||| || ||||| Sbjct 358056 ACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||||||||| ||||| ||||| || | ||| |||| | || || ||||| Sbjct 358993 TGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAA-GGTGCGTCCATCTTCAAGCTG 359051 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || ||||||||||||||||| || || || |||||||| || || || || || Sbjct 359052 CTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATCTT 359111 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || | || || || | || || |||||||| |||||||| ||||| Sbjct 359112 TGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTCCCGGT 359171 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || |||||||| ||||| Sbjct 359172 TAACGTCTTCACGAAAATCTGCAT 359195 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || ||||| ||||| || ||||| ||| | || | ||| || || ||||| || Sbjct 358137 GTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTCAAGTTGTTTTCCG 358196 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || |||||||| | ||| ||||| || || || ||||| || ||||||||||| |||| Sbjct 358197 GCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATTTTCGCTTTG 358256 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | |||||| || | ||| || || ||||| || |||||||| || | ||| Sbjct 358257 ACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTGAGTGTT 358316 Query 134697 TTAACGAAAATTTGCAT 134713 | || || || ||||| Sbjct 358317 CTTACAAAGATCTGCAT 358333 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || || ||||| || || || ||||| | |||||||| || || || ||||| || Sbjct 358813 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTTG 358872 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||||||||| |||||| || | ||| || || | || || || | ||| ||| Sbjct 358873 TCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGATG 358932 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| ||||| || ||||| |||||| Sbjct 358933 GTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 >seq4241 Length=1709304 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| || || | ||| || ||||||||||||||||||||||| ||| | Sbjct 639142 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAA 639201 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || ||||||||||| ||||| || |||||||| ||||| || || Sbjct 639202 AGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGA 639261 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || |||||||| |||||| || | || || || | || || Sbjct 639262 ATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACT 639321 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || |||||||| || || | || || ||||| || |||||| Sbjct 639322 TCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCATT 639369 Score = 123 bits (136), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||| || |||| || | || || || ||||| || || ||||||||||| | Sbjct 640157 TTCCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAG 640216 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | || | || || | ||| || || ||||| |||| ||| |||||||| || Sbjct 640217 AAAGAGTTCTGCCA-TCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGG 640275 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| || |||||||| ||| || || | |||||| || | |||| Sbjct 640276 GGAATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCC 640335 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || ||||| || || | |||||| || || |||||||| Sbjct 640336 ACCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 ||||||||||||||||| || ||||||||||| |||||||| || ||| || || Sbjct 640030 AAACGCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCT 640089 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | ||||| || | ||| || |||||||| |||||||| || || | ||| || || || Sbjct 640090 ATAGTGTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAG 640149 Query 134706 ATTTGCATT 134714 || |||||| Sbjct 640150 ATCTGCATT 640158 >seq4196 Length=1840941 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||||||||| || || || | || |||||||| || || || || || || Sbjct 1068737 TCCTCCAGCTGTTTGCCAGCGAAGATGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTA 1068678 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| || |||||| || | || ||||| | || || ||||| || ||| Sbjct 1068677 TCTTGAATCTTGGCTTTGACATTTTCAATGGTATCGGAGGCCTCTACCTCGAGGGTGATG 1068618 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || | || || || || |||||||| Sbjct 1068617 GTTTTACCCGTGAGGGTCTTCACAAAGATTTGCAT 1068583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505369055305400