Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4254 114 2e-20 seq3895 113 6e-20 seq4063 86.0 9e-12 >seq4254 Length=3256360 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| || || |||| | | |||||| || ||||| || || || || || || || Sbjct 698786 AATATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATATTCTCTATGGCGATTTG 698845 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 || || |||||||| | |||||| | ||||| |||||| || |||||| || || Sbjct 698846 GAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATTAA 698905 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||||||||| || || ||||| ||| || ||||||||||| ||||| |||||| || Sbjct 698906 ATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAGTA 698965 Query 40063 TTTTTCATCGG 40073 | | || |||| Sbjct 698966 TCTCTCGTCGG 698976 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| ||||||||| | || | ||| |||||||| ||||| ||||| | ||| Sbjct 697986 TTTTCAAATCCTAACGCAACAAATAGTCTGTCTGCAACGAATTCGATGTAATTACACATT 698045 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | |||||||||||||| | || |||||| | ||||| || | || |||||||| Sbjct 698046 AGCGTGCAATTCATTCCTATCAATTCAACTGGCAATGCCTCTGTCAAGAATTCTTTTTCA 698105 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTC--ATCACTCGGTGGATGCAATA 39599 || || ||||| | |||| || ||| | || ||| || | || || | | Sbjct 698106 ATTTCCACGGCATTCATTATGATTGATTTCACGCGCTCGAATGA--TGGCTTTTGTACAA 698163 Query 39600 AATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 |||||||||||||| || || || ||||||||||| |||| Sbjct 698164 TGTGTTTAAACATTAAACACGCAAAATCACAATGTAGTCCCT 698205 >seq3895 Length=328041 Score = 113 bits (124), Expect = 6e-20 Identities = 187/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 |||| | || ||||| || |||| |||| | ||||| ||||| || || || || | Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 | || || || | | || | | || |||||||| || ||| || ||||| || Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 ||||| || | || || | |||||||||||||||||||| || || ||||| || Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 | ||||||| | || | |||| || |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 70202 CTCTTTCGTAAATAATAACAGAATTTAGTT 70231 ||| || || || ||| |||||| || || Sbjct 4633 CTCGATCATATATTATAGCAGAATCTAATT 4604 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||| || |||||||||||| |||| ||||| ||||| |||||||| || |||| Sbjct 5473 AATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGACACATTAAGCTCCAC 5414 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | ||||||| | || |||| |||||| ||||| || ||||||||| | ||| ||| Sbjct 5413 ATCTCATCATTATACACACGTTCCATAAAAAGATCTGGTATCCAAAGACCATAAAATAGA 5354 Query 69640 TCTCT 69644 ||||| Sbjct 5353 TCTCT 5349 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 |||||| ||| || | ||||||||| | || |||||| |||||||| || | | Sbjct 6589 GTTAAATCTCGTAGTAAATGCGGATTGATGATGACAAATTCTCCAGATAATACGCGCCTT 6530 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 | || |||||||| ||||||||||| | |||||| || || || | || || || || Sbjct 6529 ATATAGATATTACTCGTATATGGTTCGATAGATTCGTTGTTCCCTAATATCTGTGCCGTC 6470 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || || |||||||| ||||| | || | |||||| | || || | ||| || Sbjct 6469 GAAGCCGTTGGCATTGGTGCTATTAAGAGCGAATTTCTTACGCCGTGCTTCGCGATCTTC 6410 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 | || | | ||||||| ||| | | | | || |||||||| | ||||||||| Sbjct 6409 GCCTTCAATTCATTCCAATTCCATAAAGCTGTCGGCTTGACATTCCACATATCGTATTGA 6350 Query 68926 AGAAT 68930 ||||| Sbjct 6349 AGAAT 6345 Score = 89.7 bits (98), Expect = 7e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 68480 TTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTG 68539 ||||| | |||| |||||||||| ||||| |||||||||||||||||| | ||| | Sbjct 6886 TTGGAACTCCTATGTGAATATTCAAAGATTGCGATTGATCGATGAAAGCTCCCCGATCGG 6827 Query 68540 CCGCCATTTTTATAA-TACTCTTTTGAGGAATTTCCCAAATAGTCTTA 68586 ||||||||| |||| |||| ||||| || || ||||| | |||||| Sbjct 6826 CCGCCATTTCAATAATTACT-TTTTGTGGTATCTCCCATACGGTCTTA 6780 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||| |||| || | | | |||||| ||| ||||| || ||||| ||||| || Sbjct 6248 ATAGGTTTTGTAAGTGCCCTTTTCTGCAGCTAATTCGCAACTAGCTTCTAAGGCACCATA 6189 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| || || ||||| || | ||||| || | || ||| ||| ||||||||||| Sbjct 6188 ATAAAGCGTCTCAAAAATTTTTATGTTGAGTTCCTTCGCCTCTTTACTCTCGAATGGATA 6129 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | || || || |||||||| || || | ||| ||||| Sbjct 6128 TCGCATTAAAAGGAACGCGTCTGCCAAACCTTGTATCCCGATACC 6084 >seq4063 Length=1308840 Score = 86.0 bits (94), Expect = 9e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||||| | |||||| |||| | |||||| ||| ||||| || |||| ||||| || Sbjct 801240 ATATGACTTATAAGGACCTTTTTCAGCAGCTATTTCGCAACTAGCTTCTAGAGCACCATA 801181 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| || || ||||| | |||| | || | |||||| ||| || |||||||| Sbjct 801180 ATAAAGAGTCTCAAAAATTTGAATATTTAATTCATTAGCTTCTTTACTTTCAAATGGATA 801121 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | ||||||||||||||| ||||| || | ||||| || Sbjct 801120 TCTCATTAAAATAAATGCATCTGCTAATCCTTGTATTCCAATTCC 801076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686868916357800