Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4254 104 2e-17 seq4296 86.0 5e-12 >seq4254 Length=3256360 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 43838 TTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTG 43897 ||||| ||| || ||||| ||||| ||||| ||| || || || ||||||||||| Sbjct 698962 TTTATTTCTCATGTCTTGGCATTTTTCGCTGCTTCCGATGGTATTGTTAATGAAAATTTA 698903 Query 43898 GTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAA 43957 || | ||| || || || || | | |||||||| ||||||||||| || ||| Sbjct 698902 ATTGAGAGATTTAGTCAGGAGGTAAAAATTGCCGAAGCACGCTGTTTTTATGGTTTCCAA 698843 Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || |||||||| |||||||||||||| ||||| Sbjct 698842 ATCGCCATAGAGAATATTCATTCGGAGATGTA 698811 >seq4296 Length=1824142 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 40737 GAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGA 40796 || || || || |||||||||||||| | || ||||| || | ||| |||| | || Sbjct 1062700 GAGGAGCTTTTGTGGTTTATCAAAGGATCAACAAATGCCAAACACTTAACAGATAAGGGT 1062759 Query 40797 GTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTG---TCTAGCATAGGATTACAA 40853 || || || ||| ||| | ||||| | | | |||| ||| || || || Sbjct 1062760 GTTCATATCTGGGATGAAAATAGTTCACGAGCTTTTTTGGATTCTTGC---GGCTTCACT 1062816 Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||||| || ||||||||| | || ||||||||||| ||||| | ||| || ||||| || Sbjct 1062817 GATAGAGAGGAAGGTGATTTGGGGCCTGTTTATGGCTTTCAATGGCGGCACTTTGGTGCT 1062876 Query 40914 AAATATGACACTATGTACTCTGATTATAC 40942 ||||| | |||| || | ||||| || Sbjct 1062877 GAATATAAAGATATGCACACAGATTACAC 1062905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397433499643225