Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3895 116 3e-21 seq4241 102 7e-17 seq4196 95.1 1e-14 seq4164 93.3 4e-14 >seq3895 Length=328041 Score = 116 bits (128), Expect = 3e-21 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 130745 AAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTC 130804 ||||| ||| ||||| ||| || |||| | ||||| || | || || || ||| Sbjct 6574 AAATGCGGATTGATGATGACAAATTCTCCAGATAATACGCGCCTTATATAGATATTACTC 6515 Query 130805 GTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATG 130864 || | ||||| | ||||||||||| || ||||| ||||| || | || || ||||| Sbjct 6514 GTATATGGTTCGATAGATTCGTTGTTCCCTAATATCTGTGCCGTCGAAGCCGTTGGCATT 6455 Query 130865 TATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCC 130924 ||| | ||| || ||||| | | |||||| ||| ||| || ||||||||||| | Sbjct 6454 GGTGCTATTAAGAGCGAATTTCTTACGCCGTGCTTCGCGATCTTCGCCTTCAATTCATTC 6395 Query 130925 CAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTAT 130977 |||| ||||| || || || |||||| ||||||||||| |||| || || Sbjct 6394 CAATTCCATAAAGCTGTCGGCTTGACA---TTCCACATATCGTATTGAAGAAT 6345 >seq4241 Length=1709304 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| ||| ||||| | || || ||||| || || |||||||| Sbjct 640159 CCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAA 640218 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| | ||| || || || | || ||||| || ||||| || || Sbjct 640219 AGAGTTCTGC-CATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGG 640277 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| ||||| || || || ||| | |||||| ||||| | ||||| || Sbjct 640278 AATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCAC 640337 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||| || || ||||||||||||||||||||||| Sbjct 640338 CTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || || || || || | || || || |||||||| ||||| ||| Sbjct 639142 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAA 639201 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || ||||||| |||||||| || || | || | |||||||||||| || || Sbjct 639202 AGAGTTCTGC-CGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGG 639260 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || || ||| ||| | | |||||| || || | || ||||| Sbjct 639261 AATGCCCTCTTTGTCCTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTCAAC 639320 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || || || || || ||||| ||||| Sbjct 639321 TTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27122 ACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTAC 27181 |||||| ||||| || || | || ||||| || ||||| ||| | |||||| Sbjct 640032 ACGCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCTAT 640091 Query 27182 AGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGAT 27241 |||||||| ||||| ||||| ||||| || | |||||| || ||||| ||||||||||| Sbjct 640092 AGTGTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGAT 640151 Query 27242 TTGCAT 27247 ||||| Sbjct 640152 CTGCAT 640157 >seq4196 Length=1840941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || |||||||| || | |||| | || || |||||||| || ||| | | Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||| || || |||||||| || | ||||| ||||| |||||| ||| | ||| Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | || || | ||| || || || || || || | ||| ||||| || || ||||||| Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 27238 AGATTTGCAT 27247 |||||||||| Sbjct 1068592 AGATTTGCAT 1068583 >seq4164 Length=697328 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || ||||||||||| || || | |||| | ||||| Sbjct 358987 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTCA 359046 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| |||| | |||||| || || || || | || || ||||| | Sbjct 359047 AGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 359106 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||| || | || |||||||| |||||||| | ||| Sbjct 359107 ATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTC 359166 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || ||||| || || ||||| Sbjct 359167 CCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || ||| |||||||| || || || ||||| ||||||||||||||| Sbjct 358335 CCACCGCGAAGCCTCAAAACCAAATGCAAGGTCGACTCTTTCTGAATATTGTAGTCGGAG 358394 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| |||| ||||| ||||| ||||| |||| | | ||| |||||||| || Sbjct 358395 AGTGTGCGACCGTCCTCGAGTTGTTTTCCGGCAAAAATTAACCTCTGCTGATCCGGAGG 358453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27016 TATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 |||| || || || | ||| | ||| | || | ||||| || ||||||||||| || | Sbjct 357874 TATTTCCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAAT 357933 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 || || |||| |||| ||||| ||||| || ||| |||| | | ||| ||||| | Sbjct 357934 CGGACAAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAG 357993 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | || ||||| || || || ||| | | || | ||||| | |||| Sbjct 357994 GAGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCTT 358053 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||| | || || | || || || | ||| || || ||||| |||||| Sbjct 358054 CAACTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCATA 358106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424910344065240