Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4297 89.7 6e-13 >seq4297 Length=562629 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || || ||| | |||||||||||||| |||| || || ||||||||| Sbjct 53384 TCTTTTCCTCCAGCGAGTCTTGTACCAAATTGACCGATGGGCTGCAGCAGATTAATGTTG 53325 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACCG 181925 || |||| | | | | || | |||| ||||| || |||||| |||||| Sbjct 53324 TTGCTACCTACAAAATTCTGCGCGAGATTAATTATGGTCGCCATCAGGGACGTTTCACCA 53265 Query 181926 TGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCT 181985 || || ||||| || | || || ||| || ||||||| || || ||||||| ||| | Sbjct 53264 TGATGATAAGCCGAATGCTCGGCGACAGATCCCGCCAATTGCGCGACCTTCACCTCACGT 53205 Query 181986 TTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATCC 182045 ||| || | || || | ||| || ||||| ||||| ||||| | ||||||| Sbjct 53204 TTGTCATTTCGTTTTAAACAGGTATATATTACTTTTCTCTGGCCCGGCTTAAAACCATCC 53145 Query 182046 GCCATATGGGCAATAGA 182062 ||||| | |||||| Sbjct 53144 ATCATATTTGGAATAGA 53128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627995534892000