Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4297 84.2 2e-11 >seq4297 Length=562629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 181/269 (67%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| | | || |||| ||| || || ||||| || | ||||| ||||| Sbjct 53411 GTGAAAATGTATCTCGGACTGGCAGAATCTTTTCCTCCAGCGAGTCTTGTACCAAATTGA 53352 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || || || | ||||||| || ||||| || || || | || | Sbjct 53351 CCGATGGGCTGCAGCAGATTAATGTTGTTGCTACCTACAAAATTCTGCGCGAGATTAATT 53292 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || | ||| || |||||||| ||||| |||| ||||| || || | ||| Sbjct 53291 ATGGTCGCCATCAGGGACGTTTCACCATGATGATAAGCCGAATGCTCGGCGACAGATCCC 53232 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTC--TTGAGGCAGGCATAAATCA 117542 |||| || || ||||||| || |||| | ||| || | |||| ||| || | Sbjct 53231 GCCAATTGCGCGACCTTCA--CCTCACGTTTGTCATTTCGTTTTAAACAGGTATATATTA 53174 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || | ||| | ||||| | ||||||| Sbjct 53173 CTTTTCTCTGGCCCGGCTTAAAACCATCC 53145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547184227271000