Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4241 159 4e-34 seq4164 150 2e-31 seq4196 129 7e-25 seq4247 95.1 1e-14 seq3895 84.2 2e-11 >seq4241 Length=1709304 Score = 159 bits (176), Expect = 4e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||||||||| || || ||||| || || || || ||||||||||| || | Sbjct 640388 ATCATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCT 640329 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | || | |||| | || ||||||||||||||||| || || ||||| ||||| Sbjct 640328 TCTGACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGAT 640269 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| ||||| || |||||||| ||||| | || |||| | || || | ||||| Sbjct 640268 CAGCAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTAC 640209 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || |||| || ||||| || || ||| |||| |||||||||| || ||| Sbjct 640208 AACATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGGA 640158 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || || || || || ||||| |||||| | Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | || || |||||||||||||| ||||| ||||| || || || Sbjct 639309 GGATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCA 639250 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| |||| |||||||| || || || || || | | || || | || || || Sbjct 639249 ACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAA 639190 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||||||| ||||| |||| || || ||||| || || Sbjct 639189 CATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639142 >seq4164 Length=697328 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| || || | || ||||| || Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || ||||||||||||||||| || ||||||||||| || ||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| ||||| || ||||||||||| | ||| || | | || |||||| Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||||||||| || ||||| || || | || ||||| || ||| Sbjct 357925 ATTCAAAAGGAATCTACACTTCACCTTGTACTTCGGCTTCGAGGCGGA 357878 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||| | ||||| || || || ||||| || |||||| | | Sbjct 359195 ATGCAGATTTTCGTGAAGACGTTAACCGGGAAAACCATAACTCTCGAAGTTGAGGCTTCT 359136 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || || ||||| ||||| || || || ||||||||| Sbjct 359135 GATACTATCGAGAATGTAAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGACCAG 359076 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| ||||| || || |||| || ||| | |||| || ||| Sbjct 359075 CAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAAGATGGACGCACCTTGTCAGATTACAAT 359016 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | || |||||||||||||| ||| Sbjct 359015 ATTCAGAAGGAATCCACTCTCCAT 358992 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| |||| | || |||||||||||||||||||| ||||| ||||| || |||||| | Sbjct 358495 ATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAGCAGAGG 358436 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 |||||||||| || || ||||||||||| | ||| || || | ||||| ||| | || Sbjct 358435 TTAATTTTTGCCGGAAAACAACTCGAGGACGGTCGCACACTCTCCGACTACAATATTCAG 358376 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||| | || ||| | ||||||||||| Sbjct 358375 AAAGAGTCGACCTTGCATTTGGTTTTGAGGCTTCGCGGTGG 358335 >seq4196 Length=1840941 Score = 129 bits (142), Expect = 7e-25 Identities = 144/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || || || || || || || ||||| ||| | Sbjct 1068583 ATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCC 1068642 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || || ||||| || |||||||||||||| || || ||| Sbjct 1068643 GATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGATCAG 1068702 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || ||||| || || || ||||||| || || || |||| || ||| Sbjct 1068703 CAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTACAAT 1068762 Query 27586 GTCCA-AAAGG 27595 |||| ||||| Sbjct 1068763 ATCCAGAAAGG 1068773 >seq4247 Length=3167485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 |||||||| || ||||| ||||| ||||| || ||||| || || |||||||| ||| | Sbjct 1136241 ATAATGCAGATTTTTGTGAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTCGAGGCG 1136300 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| |||| |||| |||| || ||||||||||| |||||||| Sbjct 1136301 TCGGATACGATTGAAAATGTGAAAGCGAAAATTCAGGATAAGGAGGG 1136347 >seq3895 Length=328041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 80131 ATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATT 80190 || |||| ||| || || ||| ||||||||| || ||||| |||||||||||||||||| Sbjct 6869 ATATTCAAAGATTGCGATTGATCGATGAAAGCTCCCCGATCGGCCGCCATTTCAATAATT 6810 Query 80191 GACTTTTGTGGAATTTCCCATACTGTACGATACA 80224 |||||||| || |||||||| || ||||| Sbjct 6809 ACTTTTTGTGGTATCTCCCATACGGTCTTATACA 6776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570277286352400