Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4164 122 5e-23 seq4241 113 3e-20 >seq4164 Length=697328 Score = 122 bits (134), Expect = 5e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | ||| || ||||| || || ||||| || | ||||| Sbjct 358116 AGACGAAGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGG 358175 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||||||||| ||||| || || || | |||||| || || || | || ||| Sbjct 358176 CCGTCTTCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCC 358235 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| ||| ||| | ||| || | |||||||||| ||| || ||||||| | Sbjct 358236 TTGTCT-TGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCT-TCGACTTCCAGAG 358293 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||||||||| || | ||| | ||||| |||||||| Sbjct 358294 TGATCGTTTTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||||||| ||||| ||||| || |||||||| | || || | |||||| Sbjct 358987 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCCATCTTCA 359046 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || |||||||| ||||| || || | || ||||| || | Sbjct 359047 AGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGG 359106 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 |||||| |||| || || || ||| ||||| | ||||| ||||| Sbjct 359107 ATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTTATGGTTTTC 359166 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||||||||| ||||| |||||||||||| || Sbjct 359167 CCGGTTAACGTCTTCACGAAAATCTGCATGGTG 359199 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| ||| || | || | || || || ||||||||||| |||||||| || Sbjct 357879 CCGCCTCGAAGCCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAC 357938 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| || |||||||| || || || || || | ||| || || || || Sbjct 357939 AAAGTGCGACCGTCCTCGAGTTGTTTTCCAGCGAAAATCAATCTCTGCTGATCAGGAGGA 357998 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCA 34657 | ||| || ||||| ||| ||| | ||| || | |||||||| | ||| || | Sbjct 357999 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTGACATTCTCAATTGTGTCCGATGCT-TCAA 358056 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || ||||| || || || || |||||||| Sbjct 358057 CTTCCAATGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 358105 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 |||||||||||||| || || || || || | || || || || || | || |||||| Sbjct 358813 TCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTTG 358872 Query 34612 TCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| ||| ||| | ||| || | |||||| ||| ||| ||||||| || || Sbjct 358873 TCT-TGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| ||||| |||||||||||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCAT 358967 >seq4241 Length=1709304 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536 || || || | ||| || || || || || || ||| |||||||||||||| ||||| Sbjct 639139 TCACCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCCTTTTGAATGTTGTAATCG 639198 Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| |||| ||||||| || ||||| || ||||| |||||||||||||| || || Sbjct 639199 GAAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCAAAGATTAAACGCTGTTGATCAGGT 639258 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTC 34655 || | ||||| ||||| ||| ||| | ||| ||| | || || || ||| Sbjct 639259 GGAATGCCCTCTTTGTC-CTGAATTTTGGCTTTGACGTTTTCTATGGTATCCGAAGCCTC 639317 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || ||||| || || | || || || || |||||||| Sbjct 639318 AACTTCAAGGGTGATGGTTTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 639368 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || || || || || || ||| || ||||||||||| ||||| ||| Sbjct 639370 CCTCCACGAAGTCGTAAAACTAAGTGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAA 639429 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTG 34589 || |||| ||||||| |||||||| || ||||| ||||||||||| || Sbjct 639430 AGAGTTCTGCCGTCTTCCAGTTGTTTGCCAGCAAAGATTAAACGCTGCTG 639479 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| || |||||||| || || || || ||||| || || ||| Sbjct 640159 CCTCCTCGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAA 640218 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | || || || ||||| || | ||| || || || || || Sbjct 640219 AGAGTTCTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGA 640278 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | || || ||||| ||| ||| | ||| || | |||||||| ||| |||| Sbjct 640279 ATACCTTCTTTGTCC-TGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCT-TCCA 640336 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || | || || ||||| || || | ||||||||||| || |||||| ||| Sbjct 640337 CCTCAAGAGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCATGATGA 640390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314711782862285