Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4164 170 2e-37 seq4241 149 5e-31 seq4247 93.3 4e-14 >seq4164 Length=697328 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||| ||| || || || || | || ||||| ||||| ||| | || Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| |||||||||||||| ||||| || ||||| |||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | || || | |||||| |||||| | |||||| | ||| |||| ||||||||||| Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGC-CGAACGTTATCCGATTACAA 358155 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || || ||||||||| | ||| | || ||||| || Sbjct 358154 TATACAAAAAGAATCAACTTTGCATTTGGTTCTTCGTCTCCGTGGTGGTAT 358104 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| | || || ||| | || || | ||||| ||| | || Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| |||||||| ||||||||||| || || || ||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAATTCAGGACAAAGAAGGAATTCCTCCTGATCAG 357986 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || |||||| | || ||| || || | |||||||| || Sbjct 357985 CAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAAT 357926 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||||||||| || || Sbjct 357925 ATTCAAAAGGAATCTAC 357909 Score = 122 bits (134), Expect = 8e-23 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 |||| ||| | ||||| | |||||| |||||||| ||||| ||||| || || || | Sbjct 358506 CGTCGGACACAATTGAAAATGTCAAAGCTAAAATTCAGGACAAGGAAGGAATCCCTCCGG 358447 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 |||| ||| | ||||| | ||||| |||||| | || ||| || || | ||||| | Sbjct 358446 ATCAGCAGAGGTTAATTTTTGCCGGAAAACAACTCGAGGACGGTCGCACACTCTCCGACT 358387 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||| || ||||||||||| |||||||||||| | | || ||||| || Sbjct 358386 ACAATATTCAGAAAGAGTCGACCTTGCATTTGGTTTTGAGGCTTCGCGGTGGTAT 358332 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || || || | || ||| | ||||| || | || Sbjct 358967 ATGCAGATTTTTGTCAAAACCTTAACGGGAAAAACCATCACTTTGGAAGTAGAGGCTTCA 358908 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| |||||||||||||| ||||| || ||||| ||||| Sbjct 358907 GATACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAG 358848 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || | || || | ||| || |||||| | ||||| Sbjct 358847 CAAAGGTTGATCTTCGCTGGAAAACAACTTGAAGA 358813 >seq4241 Length=1709304 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || | || || |||||||| || | || Sbjct 639368 ATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTCG 639309 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| |||||||| |||||||| ||||| ||||| |||||| Sbjct 639308 GATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCAA 639249 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | || |||||||| |||||||| | || |||||||||||||| Sbjct 639248 CAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAAC 639189 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||||||||| || || | || || ||||| || Sbjct 639188 ATTCAAAAGGAATCCACACTTCACTTAGTTTTACG 639154 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| |||||||| || || || | || |||||||| |||||| | || Sbjct 640386 CATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTC 640327 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || ||| |||||||| ||||||||||| || || || ||||| Sbjct 640326 TGACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCA 640267 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || || || || |||||||| | || |||| || ||||| Sbjct 640266 GCAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAA 640207 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || | ||||| || ||||| | || || || || Sbjct 640206 CATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGGAAT 640156 Score = 111 bits (122), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || ||||| | || ||||| ||||| ||| | || Sbjct 640157 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAAACCATCACTCTCGAAGTCGAAGCTTCA 640098 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || |||||||||||||||||||| ||||||||||| Sbjct 640097 GACACTATAGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGCATTCCACCCGATCAG 640038 Query 27108 CAGCGTTTA 27116 ||||||||| Sbjct 640037 CAGCGTTTA 640029 >seq4247 Length=3167485 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || || || |||||||| | ||||| | || ||||| ||||||||||| | Sbjct 1136494 AGGAATTCCGCCAGATCAACAAAGGTTAATTTTTGCTGGCAAGCAATTGGAAGATGGCAG 1136553 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | || || ||||||||||| || || || || |||||||| |||||||| ||||| Sbjct 1136554 GACTCTGTCAGACTACAACATTCAGAAAGAATCTACGTTACATTTAGTTTTGCGCTTGCG 1136613 Query 27209 GGGTGG 27214 ||||| Sbjct 1136614 AGGTGG 1136619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434893147550400