Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4164 105 5e-18 seq4241 91.5 1e-13 >seq4164 Length=697328 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| || ||||| | ||| || ||||| ||| || || | || |||||| | || Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| |||||| ||||| ||||| |||||| |||| || | Sbjct 358273 GACACAATTGAAAAT--GTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATC 358216 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || ||||| |||||||||||| | || |||| || | || |||||||||| Sbjct 358215 AACAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACA 358156 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| ||||||||||||||| | ||| | ||||| || Sbjct 358155 ATATACAAAAAGAATCAACTTTGCATTTGGTTCTTCGTCTCCGTGGTGG 358107 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| ||||| ||||| | || ||| ||||| ||||||||||| Sbjct 358486 GTCAAAGCTAAAATTCAGGACAAGGAAGGAATCCCTCCGGATCAGCAGAGGTTAATTTTT 358427 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 |||||||||||| | || |||| |||| | ||||| ||||| || || |||||| Sbjct 358426 GCCGGAAAACAACTCGAGGACGGTCGCACACTCTCCGACTACAATATTCAGAAAGAGTCG 358367 Query 27985 ACTTTGCATTTGGTTTTG 28002 || ||||||||||||||| Sbjct 358366 ACCTTGCATTTGGTTTTG 358349 >seq4241 Length=1709304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||||||||| ||| || || |||| || ||| | Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| || || || ||| ||||| |||||||||||| |||| || ||| Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATTAC 27966 ||||| | || ||||| ||||| || ||||| || | |||| || | || || ||| Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATG---GCAGAACTCTTTCTGACTAC 640209 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| || | ||||| || ||||| | || || || Sbjct 640208 AACATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGG 640159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355842254295915