Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4241 168 5e-37 seq4164 158 8e-34 seq4247 93.3 3e-14 seq4196 91.5 1e-13 >seq4241 Length=1709304 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || ||||| |||||||| ||||| || |||||||| | | Sbjct 639369 AATGCAGATCTTCGTCAAGACACTCACAGGAAAAACCATCACCCTTGAAGTTGAGGCTTC 639310 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| | ||| |||||| |||||||| || | || || ||||| Sbjct 639309 GGATACCATAGAAAACGTCAAAGCCAAAATTCAGGACAAAGAGGGCATTCCACCTGATCA 639250 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||||||| ||||| |||||||| |||||||||| | ||| | ||||||||| Sbjct 639249 ACAGCGTTTAATCTTTGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGATTACAA 639190 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || |||||| | || ||||||||| | | || ||||| Sbjct 639189 CATTCAAAAGGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGG 639142 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| || || |||||||| |||||||| || || || | | Sbjct 640385 ATGCAAATCTTTGTGAAAACTCTTACTGGAAAAACAATCACTCTTGAGGTGGAAGCTTCT 640326 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| |||||| |||||||||||| | || |||||||| Sbjct 640325 GACACAATAGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATTCCCCCAGATCAG 640266 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || || ||||||| | | ||| | || |||||| Sbjct 640265 CAACGTCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGCAGAACTCTTTCTGACTACAAC 640206 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || ||| | |||||||| | | | ||||||||| Sbjct 640205 ATCCAGAAAGAATCAACACTCCATTTAGTACTGCGTCTTCGAGGAGGA 640158 Score = 105 bits (116), Expect = 5e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||||||||| ||||| ||||||||||||||||||| | ||| | ||||||| Sbjct 639479 CAGCAGCGTTTAATCTTTGCTGGCAAACAACTGGAAGACGGCAGAACTCTTTCCGATTAC 639420 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| |||||||| |||||| | || ||||||||| | | || |||||| Sbjct 639419 AACATTCAAAAAGAATCCACACTTCACTTAGTTTTACGACTTCGTGGAGGA 639369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || ||||| || ||||| |||||||||||||| || | | Sbjct 640158 AATGCAGATCTTTGTGAAGACTCTCACAGGCAAAACCATCACTCTCGAAGTCGAAGCTTC 640099 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| ||||| || ||| ||||||||||| | || || ||||| Sbjct 640098 AGACACTATAGAAAATGTAAAAGCTAAGATTCAAGACAAAGAAGGCATTCCACCCGATCA 640039 Query 23730 ACAGCGTTTA 23739 ||||||||| Sbjct 640038 GCAGCGTTTA 640029 >seq4164 Length=697328 Score = 158 bits (174), Expect = 8e-34 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || | ||| ||||| || |||||||||||||| ||||| || | | Sbjct 358333 ATGCAGATCTTTGTAAGAACACTCACTGGTAAAACGATCACTCTGGAAGTCGAAGCATCA 358274 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| ||||| |||||| | || ||||||||| Sbjct 358273 GACACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 358214 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| |||||||| ||||||| || || ||| ||||||||| Sbjct 358213 CAGAGATTGATTTTCGCCGGAAAACAACTTGAAGACGGCCGAACGTTATCCGATTACAAT 358154 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||||||||| || || || ||||| ||| Sbjct 358153 ATACAAAAAGAATCAACTTTGCATTTGGTT 358124 Score = 113 bits (124), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| | |||||||| | || Sbjct 358105 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACATTGGAAGTTGAAGCATCG 358046 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| || ||||||||||| | || || ||||| Sbjct 358045 GACACAATTGAGAATGTCAAAGCTAAAA-TTCAGGACAAAGAAGGAATTCCTCCTGATCA 357987 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || |||||||| || |||| |||||||| |||||| || Sbjct 357986 GCAGAGATTGATTTTCGCTGGAAAACAACTCGAGGACGGTCGCACTTTGTCCGATTATAA 357927 Query 23790 CATACAAAAAGAGTCCACA 23808 || ||||| || || ||| Sbjct 357926 TATTCAAAAGGAATCTACA 357908 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || |||||||||||||| | | Sbjct 359195 ATGCAGATTTTCGTGAAGACGTTAACCGGGAAAACCATAACTCTCGAAGTTGAGGCTTCT 359136 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | |||| ||| || || || ||||| | || ||||| || Sbjct 359135 GATACTATCGAGAATGTAAAGGCAAAGATCCAGGATAAGGAAGGCATCCCACCAGACCAG 359076 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || || || || || ||||| | |||||| || |||||||| Sbjct 359075 CAGCGTTTGATTTTCGCTGGAAAGCAGCTTGAAGATGGACGCACCTTGTCAGATTACAAT 359016 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || ||||| | ||||| ||| | || || || || ||| Sbjct 359015 ATTCAGAAGGAATCCACTCTCCATTTGGTTCTCAGATTACGTGGTGGA 358968 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||| | ||||||||||| |||||| | ||||| || | | Sbjct 358968 AATGCAGATTTTTGTCAAAACCTTAACGGGAAAAACCATCACTTTGGAAGTAGAGGCTTC 358909 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||| |||||| ||||| |||||| | || |||||||| Sbjct 358908 AGATACAATTGAAAATGTCAAAGCGAAAATTCAAGACAAGGAAGGTATCCCACCAGATCA 358849 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 || | || || || || || |||||||| ||||| Sbjct 358848 GCAAAGGTTGATCTTCGCTGGAAAACAACTTGAAGA 358813 >seq4247 Length=3167485 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 |||||||||||||| | ||||| ||||| ||||| ||| ||||||| | | ||| | Sbjct 1136501 CCGCCAGATCAACAAAGGTTAATTTTTGCTGGCAAGCAATTGGAAGATGGCAGGACTCTG 1136560 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || ||||| || || |||||||||||||| | |||||||| || Sbjct 1136561 TCAGACTACAACATTCAGAAAGAATCTACGTTACATTTAGTTTTGCGCTTGCGAGGTGG 1136619 >seq4196 Length=1840941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||||||||| ||||| ||||| ||||| || || || | Sbjct 1068583 ATGCAAATCTTTGTGAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCC 1068642 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| || ||| || || || || | || || ||||| Sbjct 1068643 GATACCATTGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATTCCACCGGATCAG 1068702 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || || || |||||||| ||||| || | ||||||| | |||||||| Sbjct 1068703 CAACGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGCACTCTCTCAGATTACAAT 1068762 Query 23791 ATACAAAAAG 23800 || || |||| Sbjct 1068763 ATCCAGAAAG 1068772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337990464959660