Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4241 141 2e-28 seq4222 129 1e-24 seq4164 127 5e-24 seq4196 113 1e-19 seq4218 84.2 5e-11 seq1078 84.2 5e-11 >seq4241 Length=1709304 Score = 141 bits (156), Expect = 2e-28 Identities = 166/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || | ||||| || |||||||| |||| ||||| || | | |||| Sbjct 640165 CGAAGACGCAGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTT 640224 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| | |||||| ||||| ||||| || ||||| || || || ||||||||| Sbjct 640225 CTGCCATCTTCCAACTGCTTTCCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCT 640284 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || || ||| || || ||| ||| || ||||| || | |||||| || | Sbjct 640285 TCTTTGTCCTGAAT-TTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAG 640343 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | |||||| | || | |||||| Sbjct 640344 AGTGATTGTTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 >seq4222 Length=1518384 Score = 129 bits (142), Expect = 1e-24 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct 1474769 AAGATTTGACCGTCAGTAATAGAAATGACATTGGTAGGGATATAAGCAGACACATCACCA 1474828 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | |||||| || || || | ||||||||||| ||||||| ||| Sbjct 1474829 GCTTGCGTTTCAATAACAGGCAAAGCGGTCAACGATCCACCACCCAAATTTTCATT 1474884 >seq4164 Length=697328 Score = 127 bits (140), Expect = 5e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||||||||||| || |||| || ||||| || || || || Sbjct 358136 AGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCTTCAAGTTGTTTTCC 358195 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-T 225634 ||||| || | || ||||| || || |||||||||||||||||||| || ||| || | Sbjct 358196 GGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAAT-TTTCGCTT 358254 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | ||| ||| || |||||||| | ||| || || | |||||||| || || || | | Sbjct 358255 TGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTTTTACCAGTGAGTG 358314 Query 225695 TTTTTATGAACACTTGCAT 225713 || ||| || | ||||| Sbjct 358315 TTCTTACAAAGATCTGCAT 358333 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||| || || | |||||||||||||| || || | ||||||||| | ||| || Sbjct 358974 ACGTAATCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGT 359033 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||||||| || | || || ||||| || || || || Sbjct 359034 GCGTCCATCTTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCC 359093 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || ||||||||| ||| ||| ||||| || || || | || || || | Sbjct 359094 TTCCTTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAG 359153 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || || || | ||| | ||||| Sbjct 359154 AGTTATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || || || ||||||||||| | | ||| || || || || ||||||||||| Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||||| || ||| || || ||| ||| || || ||||| | || || || || |||| Sbjct 358872 GTCTTGAAT-TTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGA 358930 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || || ||||| || ||||| | || | |||||| Sbjct 358931 TGGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 >seq4196 Length=1840941 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| ||||||||| | | ||| | ||||| || ||||| || |||||||||| Sbjct 1068772 CTTTCTGGATATTGTAATCTGAGAGAGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 1068713 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | |||||||| || || || ||||| || ||||| ||||| ||||| || ||| || Sbjct 1068712 TGAGTCGTTGCTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTT 1068653 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | ||||| || |||| || || || | ||||| || || ||||| | || || | | Sbjct 1068652 CAATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTCACAA 1068593 Query 225704 ACACTTGCAT 225713 | | |||||| Sbjct 1068592 AGATTTGCAT 1068583 >seq4218 Length=369844 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| ||| |||| ||||| ||| | ||||| | |||| || || ||||| |||||| Sbjct 7778 CATGCTTTTATTATAATTTT-TTTATAGTTATATCTTTTATAATTGGAGGTTTTGGAAAT 7836 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 | | || ||||||| | || ||||||| || ||||| || | | || |||||| Sbjct 7837 TTTCTTGTCTCTTTAATATTAGGGACTCCTGACATAGCTTTCCCTCGAATAAATAATATA 7896 Query 7699 AGTTTTTGATTACTACCGCCTTC 7721 || ||||||||||| || || || Sbjct 7897 AGATTTTGATTACTTCCACCATC 7919 >seq1078 Length=1070 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || ||||||||||| || ||||||||||| || | ||||| || || || ||| Sbjct 1027 TTCGGGGTGACCAAAAAACCAAAATAAATGTTGGTATAAAATAGGGTCCCCCCCTCCTCT 968 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| | ||||| | |||| ||||||||| Sbjct 967 TGGATCAAAAAAAGTGGTATTTAGGTTTCGATCAGTTAA 929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192460227623630