Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3895 113 6e-20 seq4254 93.3 6e-14 seq4063 87.8 2e-12 >seq3895 Length=328041 Score = 113 bits (124), Expect = 6e-20 Identities = 187/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 |||| | || ||||| || |||| ||| | ||||| ||||| || || || |||| Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 | ||||| || | | || | | || |||||||| || ||| || || || | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 ||||| || || || || | ||||||||||||||||||||| || || | ||| || Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | ||||||| || || | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTT 78639 ||| || || || ||| |||||| || || Sbjct 4633 CTCGATCATATATTATAGCAGAATCTAATT 4604 Score = 109 bits (120), Expect = 8e-19 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 77094 GTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 |||||| ||| || | ||| ||||| | || |||||||||||| ||||| | | Sbjct 6589 GTTAAATCTCGTAGTAAATGCGGATTGATGATGACAAATTCTCCAGATAATACGCGCCTT 6530 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 | || |||||||| ||||||||||| | |||||| ||||| || || || || || || Sbjct 6529 ATATAGATATTACTCGTATATGGTTCGATAGATTCGTTGTTCCCTAATATCTGTGCCGTC 6470 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 77273 ||||| |||||||| ||||| | || | |||||| | || || | ||| || Sbjct 6469 GAAGCCGTTGGCATTGGTGCTATTAAGAGCGAATTTCTTACGCCGTGCTTCGCGATCTTC 6410 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333 | || | | ||||||| ||| | | ||| || |||| ||| | ||||||||| Sbjct 6409 GCCTTCAATTCATTCCAATTCCATAAAGCTGTCGGCTTGACATTCCACATATCGTATTGA 6350 Query 77334 AGAAT 77338 ||||| Sbjct 6349 AGAAT 6345 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| ||||| || ||||||||||| |||||||| || ||||||||||||| | Sbjct 4389 CACTAAAGCTCTTTTTGGTCTCCTTGTGTAGGTTAGATACTGCAATTCTTGCAGCTAATA 4330 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 |||||||||||||||| | || | || ||||| |||| || || | | |||||| Sbjct 4329 TAGCATAATCAGGATGATTAGTTGCCATCGTAGCTGCAGTTTCAGCTGCAAGATTATCTA 4270 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 || |||||| || |||||||||||| |||| |||||| ||||| || ||||| || Sbjct 5477 TTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGACACATTAAGCT 5418 Query 77984 CCAGTCACCATCTTCCTTA---ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||| || | || || ||| || |||| |||||| ||||| |||||||| ||| || Sbjct 5417 CCA--CATC-TCATCATTATACACACGTTCCATAAAAAGATCTGGTATCCAAAGACCATA 5361 Query 78041 AAATAGATCTC 78051 ||||||||||| Sbjct 5360 AAATAGATCTC 5350 >seq4254 Length=3256360 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 47946 TTTTTAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATC 48005 |||| ||||||||| | || ||||| |||||||||||||| || || | ||| Sbjct 697986 TTTTCAAATCCTAACGCAACAAATAGTCTGTCTGCAACGAATTCGATGTAATTACACATT 698045 Query 48006 ATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCG 48065 | |||||||||||||| | || |||||| | ||||| || | || |||| ||| Sbjct 698046 AGCGTGCAATTCATTCCTATCAATTCAACTGGCAATGCCTCTGTCAAGAATTCTTTTTCA 698105 Query 48066 ATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCACTTGGTGGATACA--AC 48122 || || |||| || ||| || ||| | || || ||| || ||| | || Sbjct 698106 ATTTCCACGGCATTCATTATGATTGATTTCACGCG----CTCGAATGATGGCTTTTGTAC 698161 Query 48123 AAA-TGTTTAAACATTAAACATGCAAAATCACAATGAAGACC 48163 || ||||||||||||||||| |||||||||||||| || || Sbjct 698162 AATGTGTTTAAACATTAAACACGCAAAATCACAATGTAGTCC 698203 >seq4063 Length=1308840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||||| | |||||| |||| | |||||| ||| ||||| ||||| | || || || Sbjct 801240 ATATGACTTATAAGGACCTTTTTCAGCAGCTATTTCGCAACTAGCTTCTAGAGCACCATA 801181 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||| || || ||||| | |||| | || | ||||| |||| ||||| ||||| Sbjct 801180 ATAAAGAGTCTCAAAAATTTGAATATTTAATTCATTAGCTTCTTTACTTTCAAATGGATA 801121 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC-AATA 77531 | | |||||| |||||||||||||| || | |||||| || |||| Sbjct 801120 TCTCATTAAAATAAATGCATCTGCTAATCCTTGTATTCCAATTCCTAATA 801071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694628465792800