Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4254 118 2e-21 seq3895 104 3e-17 seq4063 86.0 9e-12 >seq4254 Length=3256360 Score = 118 bits (130), Expect = 2e-21 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 46896 AACATATGTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATC 46953 || ||| || || |||| ||||| |||||| || |||||||| || || || || || Sbjct 698786 AATATAAGTTTCGATTAGTAAAGA--ATACATCTCCGAATGAATATTCTCTATGGCGATT 698843 Query 46954 TGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC 47013 || || || |||||||| | |||||| | ||| | |||||| || ||||| ||| Sbjct 698844 TGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGACTAAATCTCTCAATT 698903 Query 47014 AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073 ||||| ||||| || || ||||| |||||| ||||||||||| ||||| |||||| Sbjct 698904 AAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAGACATGAGAAATAAAG 698963 Query 47074 TATTTTTCATCGG 47086 ||| | || |||| Sbjct 698964 TATCTCTCGTCGG 698976 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||||||||| ||||| || || || | || ||||||||||| | ||| |||||| | Sbjct 699175 TACTTCTTCTATGGTCCAAAAGGAAGCTACAGCCTTTTTATACATTTCCCAAATATCAGG 699234 Query 47187 ATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTCCA 47242 |||||| || ||||| || ||||| | ||||||| ||| | |||| ||||||| Sbjct 699235 ATATTGTATAGGAAAGATTACAAAGCGATTTGGACTTTCTTGGAGTAGTGGTTCCA 699290 >seq3895 Length=328041 Score = 104 bits (114), Expect = 3e-17 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 |||| | || ||||| || |||| ||| | ||||| || || || || || |||| Sbjct 4873 GAAATTACCTGGACATCTGCTGATTGTTAGTACAGGCATTGAATAACGTTGGTGAAGCAT 4814 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATT 77084 | || || || | | || | | || |||||||| || || || ||||| | Sbjct 4813 GTGTAAAGTATCGTCCTGATAAAAAGTTATATGTTTCTATGGCTTTGTCAATATCATTCT 4754 Query 77085 GATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTAT 77144 ||||| || ||||| || | |||||||||||||||||||| || ||| | ||| || Sbjct 4753 CGTGAATACCGACAGCAACTCTCATCAACATATGCTGAGGTCTCTCCACAATTTTACCAT 4694 Query 77145 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 77204 | ||||||| || || | |||| | |||||||| || | |||||| || ||||| Sbjct 4693 TAATTTTCAGTAAATAGCTTCTTTCAAGTGTTTTAAAGCCGATATAGTTATAACTAAAGT 4634 Query 77205 CTCTTTCGTAAATAATAACCGAATTTAGTT 77234 ||| || || || ||| | |||| || || Sbjct 4633 CTCGATCATATATTATAGCAGAATCTAATT 4604 Score = 104 bits (114), Expect = 3e-17 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 75689 GTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGA 75748 |||||| ||| || | ||| ||||| | || |||||||||||| ||||| | | Sbjct 6589 GTTAAATCTCGTAGTAAATGCGGATTGATGATGACAAATTCTCCAGATAATACGCGCCTT 6530 Query 75749 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTT 75808 | || |||||||| ||||||||||| | |||||| ||||| || || || || || || Sbjct 6529 ATATAGATATTACTCGTATATGGTTCGATAGATTCGTTGTTCCCTAATATCTGTGCCGTC 6470 Query 75809 GAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 75868 ||||| || ||||| ||||| | || | |||||| | || || | ||| || Sbjct 6469 GAAGCCGTTGGCATTGGTGCTATTAAGAGCGAATTTCTTACGCCGTGCTTCGCGATCTTC 6410 Query 75869 TCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGT 75928 | || | | ||||||| ||| | | ||| || |||| ||| | ||||||||| Sbjct 6409 GCCTTCAATTCATTCCAATTCCATAAAGCTGTCGGCTTGACATTCCACATATCGTATTGA 6350 Query 75929 AGAAT 75933 ||||| Sbjct 6349 AGAAT 6345 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || || |||||| || |||||||||||| |||| ||||| ||||| |||| Sbjct 5488 GTATACAATTCTTTAAATTCGTCGCCCCAAACATCAGCCAAGCCAGGGGATTCAGACGGA 5429 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 ||||| || |||| |||| | | || |||| |||||| ||||| |||||||| Sbjct 5428 CACATTAAGCTCCACATCTCATCATTATACACACGTTCCATAAAAAGATCTGGTATCCAA 5369 Query 76628 AGAGCAATAAATAGATCTC 76646 ||| || ||||||||||| Sbjct 5368 AGACCATAAAATAGATCTC 5350 Score = 95.1 bits (104), Expect = 2e-14 Identities = 242/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||||||||| || ||||| | ||| || || | | ||| ||||| ||| |||||| Sbjct 6001 TACCAATAGGCCTGTGTCTTTGATTAGATATCTTCGTCTCTTTGATAGGATAAAAATTAA 5942 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| || | ||||| | ||| | | || | ||| | || || ||||| || Sbjct 5941 CATCGATGACTTTATCTAAATTACGGGTGACGATTTTTGCGACTGTTTTAAGTTTATCAA 5882 Query 76239 AATCAAA---TTTTCCATCTA---TCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||| || ||| |||| | || |||||||| | ||| ||||| || | || | Sbjct 5881 AATCGAAAGTTTTGGTATCTGCATTAACGAACATATTGACAGCGATAGAAGCCAAGTTGC 5822 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || || | || | ||| |||| | || || ||||||| || || || | Sbjct 5821 ATACAGCGACTTCTTCAGGACTGGAGTATTCGACAATTTCGGTGCATAAGTTGCTGCATT 5762 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACA-TGAGTCCTTATAAAGAAC 76410 |||| || || |||| ||| || || | |||| | ||||| ||| || || ||||| | Sbjct 5761 TGATCGTGCCTAGATGTTGATGATT-CGATTTTCGATTACAATGA-TCTTTGTAAAGCAT 5704 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 | | || ||||||||||| | || ||| | ||| | ||| ||| |||||||| Sbjct 5703 ATAAGGTGTTCCAGTTTCTACTTGCGATCTTAGAATGGCAAGCCATACGGTTCTAGCTTC 5644 Query 76471 TA 76472 || Sbjct 5643 TA 5642 >seq4063 Length=1308840 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 75984 CAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 76043 |||||| ||||||||| || |||| ||||| ||||||| || || ||||| | ||| Sbjct 801214 CAGCTATTTCGCAACTAGCTTCTAGAGCACCATAATAAAGAGTCTCAAAAATTTGAATAT 801155 Query 76044 TAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTA 76103 | | || | ||||| ||| ||||| ||||| | | ||||||||||||||||| Sbjct 801154 TTAATTCATTAGCTTCTTTACTTTCAAATGGATATCTCATTAAAATAAATGCATCTGCTA 801095 Query 76104 GTCCCTGAACTCCAATACC-AATA 76126 ||| || | |||||| || |||| Sbjct 801094 ATCCTTGTATTCCAATTCCTAATA 801071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712893005246400