Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4241 125 2e-23 seq4164 125 2e-23 >seq4241 Length=1709304 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || || ||||| ||||||||||||| | |||||| || ||||| || | Sbjct 639166 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCGGAAAGAGTTCTGCCGTCTTCCAGCTGT 639225 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | ||| || || | | || || || || || |||||||| Sbjct 639226 TTGCCAGCAAAGATTAAACGCTGTTGATCAGGTGGAATGCCCTCTTTGTCCTGAATTTTG 639285 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | |||| | | || ||| ||| |||||||| || || ||||| || ||| Sbjct 639286 GCTTTGACGTTTTCTATGGTATCCGAAGCCTCAACTTCAAGGGTGATGGTTTTTCCTGTG 639345 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 639346 AGTGTCTTGACGAAGATCTGCATT 639369 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || ||||| ||||||||||| || | | |||||| |||||| Sbjct 640174 AGTACTAAATGGAGTGTTGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCT 640233 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || ||||| || | ||||| || | | || ||||| || | Sbjct 640234 TCCAACTGCTTT--CCAGCAAAGATCAGACGTTGCTGATCTGGGGGAATACCTTCTTTGT 640291 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | |||||||| ||| ||| | |||| |||| ||| || || |||||||| || | Sbjct 640292 CCTGAATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCCACCTCAAGAGTGATTG 640351 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || ||||| ||||| |||| ||||| Sbjct 640352 TTTTTCCAGTAAGAGTTTTCACAAAGATTTGCAT 640385 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || ||||| || |||||||| || ||| ||| | |||| | Sbjct 640035 CTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCTTTTACATTTTCTATAGT 640094 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||||||| || ||||| ||||| || |||||||| |||||||||||||| |||| ||| Sbjct 640095 GTCTGAAGCTTCGACTTCGAGAGTGATGGTTTTGCCTGTGAGAGTCTTCACAAAGATCTG 640154 Query 152102 CATT 152105 |||| Sbjct 640155 CATT 640158 >seq4164 Length=697328 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || |||||||| || |||||||||| ||| |||| || ||| Sbjct 358122 AGAACCAAATGCAAAGTTGATTCTTTTTGTATATTGTAATCGGATAACGTTCGGCCGTCT 358181 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || | ||||| || || | | || |||||||| ||| Sbjct 358182 TCAAGTTGTTTTCCGGCGAAAATCAATCTCTGTTGATCTGGTGGAATACCTTCCTTGTCT 358241 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||||| | || | ||||||| || ||||| ||||| || ||| Sbjct 358242 TGAATTTTCGCTTTGACATTTTCAATTGTGTCTGATGCTTCGACTTCCAGAGTGATCGTT 358301 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | || |||| |||||| Sbjct 358302 TTACCAGTGAGTGTTCTTACAAAGATCTGCAT 358333 Score = 113 bits (124), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||| ||||| || || || || || |||||||| | || || | || Sbjct 358980 TCTGAGAACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCTGACAAGGTGCGTCC 359039 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| || ||||| || ||||| || | | ||||||||| | | ||| |||||| Sbjct 359040 ATCTTCAAGCTGCTTT--CCAGCGAAAATCAAACGCTGCTGGTCTGGTGGGATGCCTTCC 359097 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || ||| || ||| |||| | | || ||| ||| ||||| ||||| Sbjct 359098 TTATCCTGGATCTTTGCCTTTACATTCTCGATAGTATCAGAAGCCTCAACTTCGAGAGTT 359157 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | ||||||||||| | |||||| Sbjct 359158 ATGGTTTTCCCGGTTAACGTCTTCACGAAAATCTGCAT 359195 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || |||||||| | ||| ||||| || | | ||| |||||||| Sbjct 358812 ATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGCTGATCTGGTGGGATACCTTCCTT 358871 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| ||||||| | || | | |||||| ||||||||| | ||| || Sbjct 358872 GTCTTGAATTTTCGCTTTGACATTTTCAATTGTATCTGAAGCCTCTACTTCCAAAGTGAT 358931 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| | || || || || | ||||||| Sbjct 358932 GGTTTTTCCCGTTAAGGTTTTGACAAAAATCTGCATT 358968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153752131436795