Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogonomyrmex_20barbatus_20[refseq_20GCF_5F000187915.1_202011-02-04] 4,645 sequences; 235,645,958 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4254 111 2e-19 >seq4254 Length=3256360 Score = 111 bits (122), Expect = 2e-19 Identities = 134/181 (74%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 23761 TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATA 23820 ||||||| ||| | ||||| || || ||||||||| |||||| || ||||||||| Sbjct 698769 TTTTCTTTGAGATCAGAAATATAAGTTTCGATTAGTAAAGAATACATCTCCGAATGAATA 698828 Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 || || || || || || || ||||||||||| | ||||| | | || || || | | Sbjct 698829 TTCTCTATGGCGATTTGGAAACCATAAAAACAGCGTGCTTCGGCAATTTTTACCTCCTGA 698888 Query 23881 AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAG-CAAG 23939 |||||| | | ||||||||| |||||||||||||| |||||| || || | |||| Sbjct 698889 CTAAATCTCTCAATTAAATTTTCATTAACAATACCATCGGAAGCAGCGAAAAATGCCAAG 698948 Query 23940 A 23940 | Sbjct 698949 A 698949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | ||||||||| || | ||||||||| ||||| || ||| ||| ||| Sbjct 698409 CCAGGCATGATTCCTCGTTTCTTCAACCAAAATATCGCAGCGAAACTACCGCTAAAAAAA 698468 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 ||||| ||||| || ||||| || || | |||| | |||||| ||| | | | | Sbjct 698469 ATACCTTCAACCGCTGCAAAAGCAACTATACGTTCAGGAAATGTGGCACTCTCGTGATTG 698528 Query 23689 ATCCAtttttttGTCCAATTAGCCTT 23714 ||||| ||| | |||||||||||| Sbjct 698529 ATCCAGTTTAAGGCCCAATTAGCCTT 698554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521457721103000